Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SKA3Q8IX90 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.04■□□□□ 0.32
SKA3Q8IX90 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 C1QL1P1-201ENST00000568105 661 ntBASIC17.03■□□□□ 0.32
SKA3Q8IX90 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SKA3Q8IX90 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
SKA3Q8IX90 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SKA3Q8IX90 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.02■□□□□ 0.32
SKA3Q8IX90 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SKA3Q8IX90 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SKA3Q8IX90 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
SKA3Q8IX90 AC093484.2-201ENST00000580996 2166 ntBASIC17.02■□□□□ 0.31
SKA3Q8IX90 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SKA3Q8IX90 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.02■□□□□ 0.31
SKA3Q8IX90 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.02■□□□□ 0.31
SKA3Q8IX90 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.02■□□□□ 0.31
SKA3Q8IX90 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SKA3Q8IX90 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SKA3Q8IX90 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17.02■□□□□ 0.31
SKA3Q8IX90 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SKA3Q8IX90 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SKA3Q8IX90 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SKA3Q8IX90 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SKA3Q8IX90 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms