Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CD177P1-201ENST00000606252 935 ntBASIC18.86■□□□□ 0.61
VRK3Q8IV63 AL049637.2-201ENST00000641778 930 ntBASIC18.86■□□□□ 0.61
VRK3Q8IV63 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VRK3Q8IV63 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VRK3Q8IV63 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 AC131212.4-201ENST00000623606 975 ntBASIC18.84■□□□□ 0.61
VRK3Q8IV63 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.84■□□□□ 0.61
VRK3Q8IV63 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VRK3Q8IV63 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
VRK3Q8IV63 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VRK3Q8IV63 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
VRK3Q8IV63 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.83■□□□□ 0.61
VRK3Q8IV63 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.83■□□□□ 0.61
VRK3Q8IV63 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.83■□□□□ 0.6
VRK3Q8IV63 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.83■□□□□ 0.6
VRK3Q8IV63 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.83■□□□□ 0.6
VRK3Q8IV63 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.83■□□□□ 0.6
VRK3Q8IV63 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.83■□□□□ 0.6
VRK3Q8IV63 AC066615.1-201ENST00000640911 628 ntBASIC18.83■□□□□ 0.6
VRK3Q8IV63 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 AC141586.3-201ENST00000562166 1838 ntBASIC18.83■□□□□ 0.6
VRK3Q8IV63 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VRK3Q8IV63 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.83■□□□□ 0.6
VRK3Q8IV63 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VRK3Q8IV63 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 AC008040.2-201ENST00000461049 708 ntBASIC18.82■□□□□ 0.6
VRK3Q8IV63 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.82■□□□□ 0.6
VRK3Q8IV63 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms