Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 AC004448.1-201ENST00000458332 883 ntBASIC12.07□□□□□ -0.48
LINC00643Q86TS7 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
LINC00643Q86TS7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 HNRNPLP2-201ENST00000568980 1570 ntBASIC12.06□□□□□ -0.48
LINC00643Q86TS7 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 FLJ38576-201ENST00000623820 2459 ntBASIC12.06□□□□□ -0.48
LINC00643Q86TS7 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
LINC00643Q86TS7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 AC093536.1-201ENST00000569153 554 ntBASIC12.05□□□□□ -0.48
LINC00643Q86TS7 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 REST-210ENST00000638187 1334 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC12.05□□□□□ -0.48
LINC00643Q86TS7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00643Q86TS7 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms