Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS13CQ709C8 AC073314.1-201ENST00000568729 2216 ntBASIC16.09■□□□□ 0.17
VPS13CQ709C8 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.08■□□□□ 0.17
VPS13CQ709C8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13CQ709C8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13CQ709C8 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.08■□□□□ 0.17
VPS13CQ709C8 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
VPS13CQ709C8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13CQ709C8 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VPS13CQ709C8 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 AC140113.3-201ENST00000605663 199 ntBASIC16.08■□□□□ 0.16
VPS13CQ709C8 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
VPS13CQ709C8 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
VPS13CQ709C8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 ZNF444P1-201ENST00000559497 298 ntBASIC16.07■□□□□ 0.16
VPS13CQ709C8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
VPS13CQ709C8 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
VPS13CQ709C8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13CQ709C8 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13CQ709C8 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13CQ709C8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13CQ709C8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13CQ709C8 AC106795.1-205ENST00000512851 1056 ntBASIC16.06■□□□□ 0.16
VPS13CQ709C8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13CQ709C8 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS13CQ709C8 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS13CQ709C8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 CA15P1-201ENST00000481698 905 ntBASIC16.05■□□□□ 0.16
VPS13CQ709C8 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 LINC00167-201ENST00000530583 1419 ntBASIC16.05■□□□□ 0.16
VPS13CQ709C8 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS13CQ709C8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS13CQ709C8 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms