Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
TPM4P67936 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
TPM4P67936 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TPM4P67936 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.58■■□□□ 1.04
TPM4P67936 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
TPM4P67936 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.04
TPM4P67936 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.58■■□□□ 1.04
TPM4P67936 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.58■■□□□ 1.04
TPM4P67936 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.57■■□□□ 1.04
TPM4P67936 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.57■■□□□ 1.04
TPM4P67936 AL355472.2-201ENST00000422958 438 ntBASIC21.57■■□□□ 1.04
TPM4P67936 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.57■■□□□ 1.04
TPM4P67936 AC137761.2-201ENST00000561729 223 ntBASIC21.57■■□□□ 1.04
TPM4P67936 AC145350.3-201ENST00000569033 163 ntBASIC21.57■■□□□ 1.04
TPM4P67936 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.57■■□□□ 1.04
TPM4P67936 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.57■■□□□ 1.04
TPM4P67936 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.57■■□□□ 1.04
TPM4P67936 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
TPM4P67936 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.57■■□□□ 1.04
TPM4P67936 ZNF815P-204ENST00000434898 1737 ntBASIC21.57■■□□□ 1.04
TPM4P67936 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TPM4P67936 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM4P67936 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.56■■□□□ 1.04
TPM4P67936 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
TPM4P67936 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM4P67936 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM4P67936 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM4P67936 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM4P67936 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM4P67936 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.55■■□□□ 1.04
TPM4P67936 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
TPM4P67936 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.55■■□□□ 1.04
TPM4P67936 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.55■■□□□ 1.04
TPM4P67936 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.55■■□□□ 1.04
TPM4P67936 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.55■■□□□ 1.04
TPM4P67936 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
TPM4P67936 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
TPM4P67936 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.55■■□□□ 1.04
TPM4P67936 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.55■■□□□ 1.04
TPM4P67936 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.55■■□□□ 1.04
TPM4P67936 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
TPM4P67936 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TPM4P67936 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
TPM4P67936 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC21.54■■□□□ 1.04
TPM4P67936 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TPM4P67936 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.54■■□□□ 1.04
TPM4P67936 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.54■■□□□ 1.04
TPM4P67936 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.54■■□□□ 1.04
TPM4P67936 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.54■■□□□ 1.04
TPM4P67936 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.54■■□□□ 1.04
TPM4P67936 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TPM4P67936 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms