Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.51■□□□□ 0.55
CLDN6P56747 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.51■□□□□ 0.55
CLDN6P56747 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN6P56747 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.51■□□□□ 0.55
CLDN6P56747 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLDN6P56747 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CLDN6P56747 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CLDN6P56747 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.5■□□□□ 0.55
CLDN6P56747 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN6P56747 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN6P56747 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CLDN6P56747 KRT8P41-201ENST00000533985 1514 ntBASIC18.5■□□□□ 0.55
CLDN6P56747 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN6P56747 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.5■□□□□ 0.55
CLDN6P56747 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.5■□□□□ 0.55
CLDN6P56747 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN6P56747 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN6P56747 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.5■□□□□ 0.55
CLDN6P56747 ZNF444P1-201ENST00000559497 298 ntBASIC18.5■□□□□ 0.55
CLDN6P56747 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN6P56747 CKBP1-201ENST00000565489 1086 ntBASIC18.5■□□□□ 0.55
CLDN6P56747 AL512604.3-201ENST00000569583 964 ntBASIC18.5■□□□□ 0.55
CLDN6P56747 AC092119.3-201ENST00000612618 583 ntBASIC18.5■□□□□ 0.55
CLDN6P56747 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN6P56747 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.5■□□□□ 0.55
CLDN6P56747 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN6P56747 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN6P56747 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN6P56747 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN6P56747 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLDN6P56747 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.49■□□□□ 0.55
CLDN6P56747 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.49■□□□□ 0.55
CLDN6P56747 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CLDN6P56747 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.49■□□□□ 0.55
CLDN6P56747 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.49■□□□□ 0.55
CLDN6P56747 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.49■□□□□ 0.55
CLDN6P56747 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CLDN6P56747 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.49■□□□□ 0.55
CLDN6P56747 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.49■□□□□ 0.55
CLDN6P56747 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLDN6P56747 LINC01311-201ENST00000565162 1445 ntBASIC18.49■□□□□ 0.55
CLDN6P56747 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.49■□□□□ 0.55
CLDN6P56747 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CLDN6P56747 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CLDN6P56747 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
CLDN6P56747 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.48■□□□□ 0.55
CLDN6P56747 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.48■□□□□ 0.55
CLDN6P56747 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.48■□□□□ 0.55
CLDN6P56747 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CLDN6P56747 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CLDN6P56747 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.48■□□□□ 0.55
CLDN6P56747 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.48■□□□□ 0.55
CLDN6P56747 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.48■□□□□ 0.55
CLDN6P56747 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.48■□□□□ 0.55
CLDN6P56747 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.48■□□□□ 0.55
CLDN6P56747 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.48■□□□□ 0.55
CLDN6P56747 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLDN6P56747 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.48■□□□□ 0.55
CLDN6P56747 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.47■□□□□ 0.55
CLDN6P56747 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 SPDYE13P-201ENST00000445314 798 ntBASIC18.47■□□□□ 0.55
CLDN6P56747 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.47■□□□□ 0.55
CLDN6P56747 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CLDN6P56747 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.47■□□□□ 0.55
CLDN6P56747 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLDN6P56747 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CLDN6P56747 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CLDN6P56747 BX119927.1-201ENST00000636596 1552 ntBASIC18.47■□□□□ 0.55
CLDN6P56747 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.47■□□□□ 0.55
CLDN6P56747 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.47■□□□□ 0.55
CLDN6P56747 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLDN6P56747 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms