Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA3P55318 AC135279.3-201ENST00000610945 1311 ntBASIC14.46□□□□□ -0.09
FOXA3P55318 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.46□□□□□ -0.09
FOXA3P55318 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA3P55318 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.46□□□□□ -0.09
FOXA3P55318 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA3P55318 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 FGF8-207ENST00000618991 856 ntTSL 3 BASIC14.46□□□□□ -0.09
FOXA3P55318 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
FOXA3P55318 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
FOXA3P55318 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
FOXA3P55318 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA3P55318 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.1
FOXA3P55318 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA3P55318 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
FOXA3P55318 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
FOXA3P55318 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA3P55318 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
FOXA3P55318 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXA3P55318 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
FOXA3P55318 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
FOXA3P55318 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXA3P55318 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 MAG-206ENST00000597035 542 ntTSL 4 BASIC14.45□□□□□ -0.1
FOXA3P55318 AL354811.1-201ENST00000610286 706 ntBASIC14.45□□□□□ -0.1
FOXA3P55318 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC14.45□□□□□ -0.1
FOXA3P55318 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC14.45□□□□□ -0.1
FOXA3P55318 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC14.45□□□□□ -0.1
FOXA3P55318 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
FOXA3P55318 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
FOXA3P55318 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
FOXA3P55318 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXA3P55318 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.44□□□□□ -0.1
FOXA3P55318 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA3P55318 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC14.44□□□□□ -0.1
FOXA3P55318 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA3P55318 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
FOXA3P55318 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC14.44□□□□□ -0.1
FOXA3P55318 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms