Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC26.76■■□□□ 1.87
MSH6P52701 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
MSH6P52701 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
MSH6P52701 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC26.75■■□□□ 1.87
MSH6P52701 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
MSH6P52701 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC26.75■■□□□ 1.87
MSH6P52701 RPP21-221ENST00000428040 594 ntTSL 2 BASIC26.75■■□□□ 1.87
MSH6P52701 PMS2P1-201ENST00000431037 1228 ntBASIC26.75■■□□□ 1.87
MSH6P52701 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
MSH6P52701 LINC00265-3P-201ENST00000447588 903 ntBASIC26.75■■□□□ 1.87
MSH6P52701 AC012615.1-201ENST00000565797 1299 ntBASIC26.75■■□□□ 1.87
MSH6P52701 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC26.75■■□□□ 1.87
MSH6P52701 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
MSH6P52701 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC26.75■■□□□ 1.87
MSH6P52701 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC26.75■■□□□ 1.87
MSH6P52701 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
MSH6P52701 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC26.75■■□□□ 1.87
MSH6P52701 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
MSH6P52701 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC26.75■■□□□ 1.87
MSH6P52701 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.75■■□□□ 1.87
MSH6P52701 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH6P52701 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
MSH6P52701 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH6P52701 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC26.74■■□□□ 1.87
MSH6P52701 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
MSH6P52701 TSPY12P-201ENST00000421279 868 ntBASIC26.74■■□□□ 1.87
MSH6P52701 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC26.74■■□□□ 1.87
MSH6P52701 PENK-208ENST00000523051 772 ntTSL 5 BASIC26.74■■□□□ 1.87
MSH6P52701 AL121912.1-201ENST00000603683 238 ntBASIC26.74■■□□□ 1.87
MSH6P52701 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
MSH6P52701 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH6P52701 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH6P52701 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC26.74■■□□□ 1.87
MSH6P52701 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH6P52701 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH6P52701 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC26.73■■□□□ 1.87
MSH6P52701 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
MSH6P52701 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC26.73■■□□□ 1.87
MSH6P52701 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC26.73■■□□□ 1.87
MSH6P52701 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH6P52701 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC26.73■■□□□ 1.87
MSH6P52701 TBC1D3P2-202ENST00000577902 1649 ntBASIC26.73■■□□□ 1.87
MSH6P52701 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH6P52701 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC26.73■■□□□ 1.87
MSH6P52701 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH6P52701 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
MSH6P52701 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC26.72■■□□□ 1.87
MSH6P52701 HLA-A-201ENST00000376802 1334 ntBASIC26.72■■□□□ 1.87
MSH6P52701 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC26.72■■□□□ 1.87
MSH6P52701 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
MSH6P52701 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC26.72■■□□□ 1.87
MSH6P52701 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
MSH6P52701 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
MSH6P52701 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
MSH6P52701 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC26.71■■□□□ 1.87
MSH6P52701 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC26.71■■□□□ 1.87
MSH6P52701 SPEG-225ENST00000617028 815 ntTSL 5 BASIC26.71■■□□□ 1.87
MSH6P52701 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
MSH6P52701 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
MSH6P52701 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
MSH6P52701 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
MSH6P52701 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC26.71■■□□□ 1.87
MSH6P52701 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC26.71■■□□□ 1.87
MSH6P52701 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
MSH6P52701 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC26.71■■□□□ 1.87
MSH6P52701 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC26.71■■□□□ 1.87
MSH6P52701 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC26.7■■□□□ 1.87
MSH6P52701 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC26.7■■□□□ 1.87
MSH6P52701 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC26.7■■□□□ 1.86
MSH6P52701 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
MSH6P52701 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC26.7■■□□□ 1.86
MSH6P52701 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC26.7■■□□□ 1.86
MSH6P52701 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC26.7■■□□□ 1.86
MSH6P52701 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
MSH6P52701 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC26.7■■□□□ 1.86
MSH6P52701 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
MSH6P52701 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC26.69■■□□□ 1.86
MSH6P52701 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC26.69■■□□□ 1.86
MSH6P52701 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
MSH6P52701 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 AL590627.1-203ENST00000421194 1026 ntBASIC26.69■■□□□ 1.86
MSH6P52701 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
MSH6P52701 TSPY22P-201ENST00000427496 604 ntBASIC26.69■■□□□ 1.86
MSH6P52701 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
MSH6P52701 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC26.69■■□□□ 1.86
MSH6P52701 TOB2P1-201ENST00000469761 992 ntBASIC26.69■■□□□ 1.86
MSH6P52701 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC26.69■■□□□ 1.86
MSH6P52701 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC26.69■■□□□ 1.86
MSH6P52701 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
MSH6P52701 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
MSH6P52701 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms