Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CXCL12P48061 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.2■□□□□ 0.66
CXCL12P48061 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.2■□□□□ 0.66
CXCL12P48061 UNC93B7-201ENST00000509439 705 ntBASIC19.2■□□□□ 0.66
CXCL12P48061 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.2■□□□□ 0.66
CXCL12P48061 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 MIR3180-1-201ENST00000580374 94 ntBASIC19.2■□□□□ 0.66
CXCL12P48061 MIR3180-3-201ENST00000584616 94 ntBASIC19.2■□□□□ 0.66
CXCL12P48061 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.2■□□□□ 0.66
CXCL12P48061 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.2■□□□□ 0.66
CXCL12P48061 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.2■□□□□ 0.66
CXCL12P48061 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.2■□□□□ 0.66
CXCL12P48061 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.19■□□□□ 0.66
CXCL12P48061 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.19■□□□□ 0.66
CXCL12P48061 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CXCL12P48061 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CXCL12P48061 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CXCL12P48061 PVRIG2P-201ENST00000435460 978 ntBASIC19.19■□□□□ 0.66
CXCL12P48061 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.19■□□□□ 0.66
CXCL12P48061 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.19■□□□□ 0.66
CXCL12P48061 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.19■□□□□ 0.66
CXCL12P48061 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.19■□□□□ 0.66
CXCL12P48061 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.19■□□□□ 0.66
CXCL12P48061 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CXCL12P48061 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.19■□□□□ 0.66
CXCL12P48061 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CXCL12P48061 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CXCL12P48061 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CXCL12P48061 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.18■□□□□ 0.66
CXCL12P48061 AP000347.1-202ENST00000435868 847 ntBASIC19.18■□□□□ 0.66
CXCL12P48061 NUS1P1-201ENST00000446295 882 ntBASIC19.18■□□□□ 0.66
CXCL12P48061 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.18■□□□□ 0.66
CXCL12P48061 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.18■□□□□ 0.66
CXCL12P48061 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CXCL12P48061 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.18■□□□□ 0.66
CXCL12P48061 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.17■□□□□ 0.66
CXCL12P48061 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.17■□□□□ 0.66
CXCL12P48061 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CXCL12P48061 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 AP002383.4-201ENST00000442518 975 ntBASIC19.17■□□□□ 0.66
CXCL12P48061 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.17■□□□□ 0.66
CXCL12P48061 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.17■□□□□ 0.66
CXCL12P48061 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.17■□□□□ 0.66
CXCL12P48061 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.17■□□□□ 0.66
CXCL12P48061 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CXCL12P48061 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.17■□□□□ 0.66
CXCL12P48061 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.17■□□□□ 0.66
CXCL12P48061 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.17■□□□□ 0.66
CXCL12P48061 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.17■□□□□ 0.66
CXCL12P48061 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.17■□□□□ 0.66
CXCL12P48061 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CXCL12P48061 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.16■□□□□ 0.66
CXCL12P48061 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CXCL12P48061 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.16■□□□□ 0.66
CXCL12P48061 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CXCL12P48061 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
CXCL12P48061 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CXCL12P48061 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CXCL12P48061 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CXCL12P48061 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.16■□□□□ 0.66
CXCL12P48061 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CXCL12P48061 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.16■□□□□ 0.66
CXCL12P48061 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CXCL12P48061 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.16■□□□□ 0.66
CXCL12P48061 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CXCL12P48061 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms