Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
BRCC3P46736 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRCC3P46736 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRCC3P46736 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
BRCC3P46736 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRCC3P46736 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRCC3P46736 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRCC3P46736 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
BRCC3P46736 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
BRCC3P46736 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.52■□□□□ 0.88
BRCC3P46736 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCC3P46736 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.52■□□□□ 0.88
BRCC3P46736 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
BRCC3P46736 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCC3P46736 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
BRCC3P46736 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
BRCC3P46736 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCC3P46736 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCC3P46736 AL353719.1-201ENST00000566847 864 ntBASIC20.52■□□□□ 0.88
BRCC3P46736 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCC3P46736 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.52■□□□□ 0.88
BRCC3P46736 AL590326.2-201ENST00000625139 305 ntBASIC20.52■□□□□ 0.88
BRCC3P46736 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCC3P46736 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCC3P46736 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.52■□□□□ 0.88
BRCC3P46736 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.52■□□□□ 0.88
BRCC3P46736 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
BRCC3P46736 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
BRCC3P46736 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.52■□□□□ 0.87
BRCC3P46736 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
BRCC3P46736 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
BRCC3P46736 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
BRCC3P46736 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
BRCC3P46736 ARMC10P1-201ENST00000313754 855 ntBASIC20.51■□□□□ 0.87
BRCC3P46736 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.51■□□□□ 0.87
BRCC3P46736 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 AC010653.2-201ENST00000623505 997 ntBASIC20.51■□□□□ 0.87
BRCC3P46736 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.51■□□□□ 0.87
BRCC3P46736 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.51■□□□□ 0.87
BRCC3P46736 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.51■□□□□ 0.87
BRCC3P46736 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
BRCC3P46736 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.5■□□□□ 0.87
BRCC3P46736 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 TSPY17P-201ENST00000450329 467 ntBASIC20.5■□□□□ 0.87
BRCC3P46736 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.5■□□□□ 0.87
BRCC3P46736 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.5■□□□□ 0.87
BRCC3P46736 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.5■□□□□ 0.87
BRCC3P46736 AL138966.2-201ENST00000621997 464 ntBASIC20.5■□□□□ 0.87
BRCC3P46736 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
BRCC3P46736 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.5■□□□□ 0.87
BRCC3P46736 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.5■□□□□ 0.87
BRCC3P46736 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCC3P46736 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCC3P46736 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCC3P46736 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
BRCC3P46736 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.49■□□□□ 0.87
BRCC3P46736 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.49■□□□□ 0.87
BRCC3P46736 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCC3P46736 CA15P1-201ENST00000481698 905 ntBASIC20.49■□□□□ 0.87
BRCC3P46736 WWOX-216ENST00000569818 525 ntBASIC20.49■□□□□ 0.87
BRCC3P46736 NTF6B-201ENST00000591913 560 ntBASIC20.49■□□□□ 0.87
BRCC3P46736 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
BRCC3P46736 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
BRCC3P46736 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.49■□□□□ 0.87
BRCC3P46736 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCC3P46736 AC125437.2-201ENST00000625180 2167 ntBASIC20.49■□□□□ 0.87
BRCC3P46736 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.49■□□□□ 0.87
BRCC3P46736 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCC3P46736 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BRCC3P46736 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.49■□□□□ 0.87
BRCC3P46736 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms