Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.08■□□□□ 0.8
HOXA9P31269 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.08■□□□□ 0.8
HOXA9P31269 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.07■□□□□ 0.8
HOXA9P31269 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
HOXA9P31269 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXA9P31269 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
HOXA9P31269 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.07■□□□□ 0.8
HOXA9P31269 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXA9P31269 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.07■□□□□ 0.8
HOXA9P31269 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.07■□□□□ 0.8
HOXA9P31269 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.07■□□□□ 0.8
HOXA9P31269 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXA9P31269 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
HOXA9P31269 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.07■□□□□ 0.8
HOXA9P31269 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
HOXA9P31269 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXA9P31269 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
HOXA9P31269 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXA9P31269 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXA9P31269 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXA9P31269 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXA9P31269 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
HOXA9P31269 KRT18P56-201ENST00000507275 550 ntBASIC20.06■□□□□ 0.8
HOXA9P31269 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
HOXA9P31269 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.06■□□□□ 0.8
HOXA9P31269 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.06■□□□□ 0.8
HOXA9P31269 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXA9P31269 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXA9P31269 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.06■□□□□ 0.8
HOXA9P31269 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
HOXA9P31269 GABARAPL3-202ENST00000624044 1851 ntBASIC20.06■□□□□ 0.8
HOXA9P31269 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
HOXA9P31269 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HOXA9P31269 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXA9P31269 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXA9P31269 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
HOXA9P31269 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HOXA9P31269 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HOXA9P31269 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.05■□□□□ 0.8
HOXA9P31269 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXA9P31269 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HOXA9P31269 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HOXA9P31269 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
HOXA9P31269 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HOXA9P31269 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
HOXA9P31269 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.05■□□□□ 0.8
HOXA9P31269 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.05■□□□□ 0.8
HOXA9P31269 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
HOXA9P31269 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXA9P31269 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HOXA9P31269 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXA9P31269 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXA9P31269 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HOXA9P31269 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 AC104417.2-201ENST00000562989 1793 ntBASIC20.04■□□□□ 0.8
HOXA9P31269 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXA9P31269 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.04■□□□□ 0.8
HOXA9P31269 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
HOXA9P31269 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
HOXA9P31269 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.04■□□□□ 0.8
HOXA9P31269 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.04■□□□□ 0.8
HOXA9P31269 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXA9P31269 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXA9P31269 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.04■□□□□ 0.8
HOXA9P31269 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXA9P31269 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXA9P31269 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HOXA9P31269 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXA9P31269 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms