Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 PHGDH-210ENST00000641115 1638 ntBASIC16.31■□□□□ 0.2
USF1P22415 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC16.31■□□□□ 0.2
USF1P22415 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.31■□□□□ 0.2
USF1P22415 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.31■□□□□ 0.2
USF1P22415 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
USF1P22415 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.31■□□□□ 0.2
USF1P22415 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
USF1P22415 AC104076.2-201ENST00000448912 469 ntBASIC16.31■□□□□ 0.2
USF1P22415 ECEL1P2-202ENST00000465689 757 ntBASIC16.31■□□□□ 0.2
USF1P22415 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.31■□□□□ 0.2
USF1P22415 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.31■□□□□ 0.2
USF1P22415 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
USF1P22415 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.31■□□□□ 0.2
USF1P22415 AC010203.1-204ENST00000548782 407 ntBASIC16.31■□□□□ 0.2
USF1P22415 SLC25A1P4-201ENST00000567977 778 ntBASIC16.31■□□□□ 0.2
USF1P22415 AC087388.1-201ENST00000571370 1112 ntBASIC16.31■□□□□ 0.2
USF1P22415 NTF6B-201ENST00000591913 560 ntBASIC16.31■□□□□ 0.2
USF1P22415 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC16.31■□□□□ 0.2
USF1P22415 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
USF1P22415 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.31■□□□□ 0.2
USF1P22415 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
USF1P22415 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.31■□□□□ 0.2
USF1P22415 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
USF1P22415 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.3■□□□□ 0.2
USF1P22415 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
USF1P22415 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.3■□□□□ 0.2
USF1P22415 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
USF1P22415 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.3■□□□□ 0.2
USF1P22415 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
USF1P22415 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.3■□□□□ 0.2
USF1P22415 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
USF1P22415 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.3■□□□□ 0.2
USF1P22415 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
USF1P22415 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.29■□□□□ 0.2
USF1P22415 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.29■□□□□ 0.2
USF1P22415 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
USF1P22415 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
USF1P22415 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.29■□□□□ 0.2
USF1P22415 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
USF1P22415 AC130371.2-201ENST00000619443 611 ntBASIC16.29■□□□□ 0.2
USF1P22415 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
USF1P22415 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
USF1P22415 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
USF1P22415 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
USF1P22415 AL391422.3-201ENST00000603791 2761 ntBASIC16.28■□□□□ 0.2
USF1P22415 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
USF1P22415 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.28■□□□□ 0.2
USF1P22415 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
USF1P22415 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
USF1P22415 AC099778.1-201ENST00000568593 1911 ntBASIC16.28■□□□□ 0.2
USF1P22415 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
USF1P22415 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.28■□□□□ 0.2
USF1P22415 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC16.28■□□□□ 0.2
USF1P22415 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
USF1P22415 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
USF1P22415 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.28■□□□□ 0.2
USF1P22415 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms