Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 TUBB8P6-201ENST00000436895 1288 ntBASIC19.85■□□□□ 0.77
COL9A1P20849 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 FOSL1P1-201ENST00000511041 816 ntBASIC19.85■□□□□ 0.77
COL9A1P20849 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.85■□□□□ 0.77
COL9A1P20849 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 SART3-203ENST00000546611 1184 ntBASIC19.85■□□□□ 0.77
COL9A1P20849 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.85■□□□□ 0.77
COL9A1P20849 AC106730.1-201ENST00000566722 1090 ntBASIC19.85■□□□□ 0.77
COL9A1P20849 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.85■□□□□ 0.77
COL9A1P20849 AC131212.4-201ENST00000623606 975 ntBASIC19.85■□□□□ 0.77
COL9A1P20849 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.85■□□□□ 0.77
COL9A1P20849 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.85■□□□□ 0.77
COL9A1P20849 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL9A1P20849 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.85■□□□□ 0.77
COL9A1P20849 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.85■□□□□ 0.77
COL9A1P20849 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL9A1P20849 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL9A1P20849 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.84■□□□□ 0.77
COL9A1P20849 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL9A1P20849 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL9A1P20849 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL9A1P20849 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
COL9A1P20849 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.84■□□□□ 0.77
COL9A1P20849 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.84■□□□□ 0.77
COL9A1P20849 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL9A1P20849 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.84■□□□□ 0.77
COL9A1P20849 RASA4DP-201ENST00000460726 1199 ntBASIC19.84■□□□□ 0.77
COL9A1P20849 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.84■□□□□ 0.77
COL9A1P20849 AC073648.2-201ENST00000510116 352 ntBASIC19.84■□□□□ 0.77
COL9A1P20849 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.84■□□□□ 0.77
COL9A1P20849 TPSP2-201ENST00000561760 610 ntBASIC19.84■□□□□ 0.77
COL9A1P20849 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.84■□□□□ 0.77
COL9A1P20849 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
COL9A1P20849 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL9A1P20849 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL9A1P20849 PHGDH-210ENST00000641115 1638 ntBASIC19.84■□□□□ 0.77
COL9A1P20849 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.83■□□□□ 0.77
COL9A1P20849 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL9A1P20849 KRT16P4-201ENST00000453883 522 ntBASIC19.83■□□□□ 0.77
COL9A1P20849 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.83■□□□□ 0.77
COL9A1P20849 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.83■□□□□ 0.77
COL9A1P20849 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.83■□□□□ 0.77
COL9A1P20849 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.83■□□□□ 0.77
COL9A1P20849 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
COL9A1P20849 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL9A1P20849 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL9A1P20849 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.83■□□□□ 0.76
COL9A1P20849 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL9A1P20849 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL9A1P20849 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.83■□□□□ 0.76
COL9A1P20849 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.82■□□□□ 0.76
COL9A1P20849 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.82■□□□□ 0.76
COL9A1P20849 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL9A1P20849 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 FAM8A3P-201ENST00000427218 844 ntBASIC19.82■□□□□ 0.76
COL9A1P20849 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.82■□□□□ 0.76
COL9A1P20849 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.82■□□□□ 0.76
COL9A1P20849 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.82■□□□□ 0.76
COL9A1P20849 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.82■□□□□ 0.76
COL9A1P20849 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC19.82■□□□□ 0.76
COL9A1P20849 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.82■□□□□ 0.76
COL9A1P20849 AC064862.7-201ENST00000604520 867 ntBASIC19.82■□□□□ 0.76
COL9A1P20849 AL023803.3-201ENST00000615559 522 ntBASIC19.82■□□□□ 0.76
COL9A1P20849 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.82■□□□□ 0.76
COL9A1P20849 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.82■□□□□ 0.76
COL9A1P20849 AC083906.6-201ENST00000641366 219 ntBASIC19.82■□□□□ 0.76
COL9A1P20849 AC079781.4-201ENST00000641908 219 ntBASIC19.82■□□□□ 0.76
COL9A1P20849 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.82■□□□□ 0.76
COL9A1P20849 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL9A1P20849 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
COL9A1P20849 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
COL9A1P20849 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.81■□□□□ 0.76
COL9A1P20849 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
COL9A1P20849 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.81■□□□□ 0.76
COL9A1P20849 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL9A1P20849 AP000523.1-201ENST00000398242 1049 ntBASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms