Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RTN3O95197 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RTN3O95197 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.3■□□□□ 0.84
RTN3O95197 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.3■□□□□ 0.84
RTN3O95197 AL390955.1-201ENST00000428694 934 ntBASIC20.3■□□□□ 0.84
RTN3O95197 FAM207BP-201ENST00000447172 505 ntBASIC20.3■□□□□ 0.84
RTN3O95197 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
RTN3O95197 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.3■□□□□ 0.84
RTN3O95197 AC012306.2-201ENST00000609350 630 ntBASIC20.3■□□□□ 0.84
RTN3O95197 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RTN3O95197 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RTN3O95197 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RTN3O95197 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RTN3O95197 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.3■□□□□ 0.84
RTN3O95197 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.3■□□□□ 0.84
RTN3O95197 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RTN3O95197 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.29■□□□□ 0.84
RTN3O95197 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 AC091390.4-202ENST00000476426 537 ntBASIC20.29■□□□□ 0.84
RTN3O95197 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.29■□□□□ 0.84
RTN3O95197 NAPSB-206ENST00000562112 1266 ntBASIC20.29■□□□□ 0.84
RTN3O95197 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.29■□□□□ 0.84
RTN3O95197 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
RTN3O95197 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RTN3O95197 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.29■□□□□ 0.84
RTN3O95197 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
RTN3O95197 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 KRT8P9-201ENST00000558927 1449 ntBASIC20.28■□□□□ 0.84
RTN3O95197 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.28■□□□□ 0.84
RTN3O95197 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.28■□□□□ 0.84
RTN3O95197 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RTN3O95197 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RTN3O95197 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.28■□□□□ 0.84
RTN3O95197 AC008040.2-201ENST00000461049 708 ntBASIC20.28■□□□□ 0.84
RTN3O95197 SLC25A1P4-201ENST00000567977 778 ntBASIC20.28■□□□□ 0.84
RTN3O95197 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.28■□□□□ 0.84
RTN3O95197 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.28■□□□□ 0.84
RTN3O95197 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RTN3O95197 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.28■□□□□ 0.84
RTN3O95197 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.28■□□□□ 0.84
RTN3O95197 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.27■□□□□ 0.84
RTN3O95197 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 LINC01465-201ENST00000408887 1940 ntBASIC20.27■□□□□ 0.84
RTN3O95197 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.27■□□□□ 0.84
RTN3O95197 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.27■□□□□ 0.84
RTN3O95197 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.27■□□□□ 0.84
RTN3O95197 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
RTN3O95197 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.27■□□□□ 0.84
RTN3O95197 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 CRYGFP-201ENST00000418459 633 ntBASIC20.27■□□□□ 0.84
RTN3O95197 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.27■□□□□ 0.84
RTN3O95197 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.27■□□□□ 0.84
RTN3O95197 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.27■□□□□ 0.84
RTN3O95197 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.27■□□□□ 0.84
RTN3O95197 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
RTN3O95197 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
RTN3O95197 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RTN3O95197 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RTN3O95197 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
RTN3O95197 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
RTN3O95197 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RTN3O95197 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.27■□□□□ 0.83
RTN3O95197 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RTN3O95197 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RTN3O95197 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.26■□□□□ 0.83
RTN3O95197 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RTN3O95197 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms