Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
RNF40O75150 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF40O75150 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
RNF40O75150 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
RNF40O75150 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.74■□□□□ 0.91
RNF40O75150 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
RNF40O75150 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.74■□□□□ 0.91
RNF40O75150 AC133681.1-201ENST00000465482 601 ntBASIC20.74■□□□□ 0.91
RNF40O75150 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF40O75150 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
RNF40O75150 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.73■□□□□ 0.91
RNF40O75150 BX088651.1-201ENST00000540551 451 ntBASIC20.73■□□□□ 0.91
RNF40O75150 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.73■□□□□ 0.91
RNF40O75150 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.73■□□□□ 0.91
RNF40O75150 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
RNF40O75150 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RNF40O75150 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.73■□□□□ 0.91
RNF40O75150 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.73■□□□□ 0.91
RNF40O75150 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.73■□□□□ 0.91
RNF40O75150 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
RNF40O75150 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
RNF40O75150 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF40O75150 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.73■□□□□ 0.91
RNF40O75150 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF40O75150 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
RNF40O75150 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 AL138781.2-201ENST00000617896 1843 ntBASIC20.72■□□□□ 0.91
RNF40O75150 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF40O75150 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 KRASP1-201ENST00000407852 552 ntBASIC20.72■□□□□ 0.91
RNF40O75150 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.72■□□□□ 0.91
RNF40O75150 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF40O75150 LINC01023-201ENST00000606054 436 ntBASIC20.72■□□□□ 0.91
RNF40O75150 AL356652.1-201ENST00000615962 565 ntBASIC20.72■□□□□ 0.91
RNF40O75150 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF40O75150 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
RNF40O75150 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 FAM210CP-201ENST00000445714 574 ntBASIC20.71■□□□□ 0.91
RNF40O75150 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.71■□□□□ 0.91
RNF40O75150 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF40O75150 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 AC110285.5-201ENST00000611501 352 ntBASIC20.71■□□□□ 0.91
RNF40O75150 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
RNF40O75150 AL049637.2-201ENST00000641778 930 ntBASIC20.71■□□□□ 0.91
RNF40O75150 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.71■□□□□ 0.91
RNF40O75150 KRT17P2-201ENST00000300992 1314 ntBASIC20.71■□□□□ 0.91
RNF40O75150 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF40O75150 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF40O75150 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RNF40O75150 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms