Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LMX1BO60663 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1BO60663 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1BO60663 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1BO60663 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1BO60663 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1BO60663 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 LINC01023-201ENST00000606054 436 ntBASIC16.93■□□□□ 0.3
LMX1BO60663 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.93■□□□□ 0.3
LMX1BO60663 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1BO60663 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LMX1BO60663 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC16.93■□□□□ 0.3
LMX1BO60663 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1BO60663 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1BO60663 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.92■□□□□ 0.3
LMX1BO60663 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.92■□□□□ 0.3
LMX1BO60663 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1BO60663 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.92■□□□□ 0.3
LMX1BO60663 TFP1-202ENST00000475455 1573 ntBASIC16.92■□□□□ 0.3
LMX1BO60663 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LMX1BO60663 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.92■□□□□ 0.3
LMX1BO60663 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.91■□□□□ 0.3
LMX1BO60663 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 AL161938.1-201ENST00000569833 2180 ntBASIC16.91■□□□□ 0.3
LMX1BO60663 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1BO60663 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1BO60663 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LMX1BO60663 ISG20-202ENST00000379224 540 ntTSL 3 BASIC16.91■□□□□ 0.3
LMX1BO60663 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LMX1BO60663 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.91■□□□□ 0.3
LMX1BO60663 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
LMX1BO60663 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.91■□□□□ 0.3
LMX1BO60663 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LMX1BO60663 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.91■□□□□ 0.3
LMX1BO60663 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC16.91■□□□□ 0.3
LMX1BO60663 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 KRT17P2-201ENST00000300992 1314 ntBASIC16.91■□□□□ 0.3
LMX1BO60663 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LMX1BO60663 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 TEX21P-204ENST00000641479 1693 ntBASIC16.91■□□□□ 0.3
LMX1BO60663 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LMX1BO60663 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.9■□□□□ 0.3
LMX1BO60663 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LMX1BO60663 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms