Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LDB2O43679 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.27■□□□□ 0.68
LDB2O43679 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
LDB2O43679 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
LDB2O43679 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.27■□□□□ 0.68
LDB2O43679 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 GCSHP5-201ENST00000443090 522 ntBASIC19.27■□□□□ 0.68
LDB2O43679 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.27■□□□□ 0.68
LDB2O43679 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.27■□□□□ 0.68
LDB2O43679 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.27■□□□□ 0.68
LDB2O43679 AC142381.4-202ENST00000563973 229 ntBASIC19.27■□□□□ 0.68
LDB2O43679 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.27■□□□□ 0.68
LDB2O43679 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.27■□□□□ 0.68
LDB2O43679 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.27■□□□□ 0.68
LDB2O43679 FAM197Y4-202ENST00000622692 608 ntBASIC19.27■□□□□ 0.68
LDB2O43679 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LDB2O43679 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.27■□□□□ 0.68
LDB2O43679 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
LDB2O43679 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB2O43679 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
LDB2O43679 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB2O43679 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB2O43679 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
LDB2O43679 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.26■□□□□ 0.67
LDB2O43679 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.26■□□□□ 0.67
LDB2O43679 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
LDB2O43679 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.26■□□□□ 0.67
LDB2O43679 RPS2P4-201ENST00000476944 856 ntBASIC19.26■□□□□ 0.67
LDB2O43679 Z85996.1-201ENST00000494644 937 ntBASIC19.26■□□□□ 0.67
LDB2O43679 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.26■□□□□ 0.67
LDB2O43679 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.26■□□□□ 0.67
LDB2O43679 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.26■□□□□ 0.67
LDB2O43679 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.26■□□□□ 0.67
LDB2O43679 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.26■□□□□ 0.67
LDB2O43679 RARRES2P10-201ENST00000564312 460 ntBASIC19.26■□□□□ 0.67
LDB2O43679 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.26■□□□□ 0.67
LDB2O43679 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.26■□□□□ 0.67
LDB2O43679 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.26■□□□□ 0.67
LDB2O43679 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.26■□□□□ 0.67
LDB2O43679 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 AL049812.1-201ENST00000432563 2267 ntBASIC19.26■□□□□ 0.67
LDB2O43679 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LDB2O43679 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
LDB2O43679 KRT8P41-201ENST00000533985 1514 ntBASIC19.25■□□□□ 0.67
LDB2O43679 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.25■□□□□ 0.67
LDB2O43679 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.25■□□□□ 0.67
LDB2O43679 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 AC093827.2-201ENST00000512654 315 ntBASIC19.25■□□□□ 0.67
LDB2O43679 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.25■□□□□ 0.67
LDB2O43679 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.25■□□□□ 0.67
LDB2O43679 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LDB2O43679 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
LDB2O43679 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.25■□□□□ 0.67
LDB2O43679 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.24■□□□□ 0.67
LDB2O43679 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDB2O43679 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LDB2O43679 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LDB2O43679 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
LDB2O43679 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.24■□□□□ 0.67
LDB2O43679 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms