Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.93■□□□□ 0.46
HMGN4O00479 PRKY-204ENST00000533551 1019 ntBASIC17.93■□□□□ 0.46
HMGN4O00479 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.93■□□□□ 0.46
HMGN4O00479 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.93■□□□□ 0.46
HMGN4O00479 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HMGN4O00479 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
HMGN4O00479 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
HMGN4O00479 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
HMGN4O00479 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.92■□□□□ 0.46
HMGN4O00479 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGN4O00479 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HMGN4O00479 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGN4O00479 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
HMGN4O00479 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
HMGN4O00479 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 ID1-201ENST00000376105 1233 ntBASIC17.92■□□□□ 0.46
HMGN4O00479 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGN4O00479 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGN4O00479 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.92■□□□□ 0.46
HMGN4O00479 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGN4O00479 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.92■□□□□ 0.46
HMGN4O00479 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.92■□□□□ 0.46
HMGN4O00479 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
HMGN4O00479 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGN4O00479 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.92■□□□□ 0.46
HMGN4O00479 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HMGN4O00479 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 AL138781.2-201ENST00000617896 1843 ntBASIC17.91■□□□□ 0.46
HMGN4O00479 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HMGN4O00479 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 NBPF21P-201ENST00000425093 1451 ntBASIC17.91■□□□□ 0.46
HMGN4O00479 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGN4O00479 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 RNA5SP413-201ENST00000516373 109 ntBASIC17.91■□□□□ 0.46
HMGN4O00479 AP003097.1-201ENST00000530657 1135 ntBASIC17.91■□□□□ 0.46
HMGN4O00479 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGN4O00479 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGN4O00479 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.91■□□□□ 0.46
HMGN4O00479 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.91■□□□□ 0.46
HMGN4O00479 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.91■□□□□ 0.46
HMGN4O00479 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HMGN4O00479 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGN4O00479 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HMGN4O00479 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGN4O00479 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGN4O00479 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.9■□□□□ 0.46
HMGN4O00479 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HMGN4O00479 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
HMGN4O00479 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms