Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC090897.3-201ENST00000636973 1157 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 LINC02211-204ENST00000642024 1070 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 AC105074.1-201ENST00000623380 3095 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 MTND4P26-201ENST00000415971 1359 ntBASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.96□□□□□ -1.78
CCDC3Q9BQI4 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC011978.2-201ENST00000569835 2054 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 HMGB1P5-201ENST00000255320 642 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 SNORD35B-201ENST00000363660 87 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RNU4-92P-201ENST00000363783 136 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RNU4-68P-201ENST00000364314 141 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RNU6-707P-201ENST00000364647 95 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 MIR217-201ENST00000384817 110 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 MIR200C-201ENST00000384980 68 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL590704.1-201ENST00000402856 794 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC004022.2-201ENST00000413824 193 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL592310.1-201ENST00000414330 671 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC233981.1-201ENST00000423224 461 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RPS6P12-201ENST00000432491 726 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RAD23BP3-201ENST00000454157 1152 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RPL23AP2-201ENST00000471227 466 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RPS4XP15-201ENST00000489210 795 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 RN7SKP82-201ENST00000516786 223 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AP001317.1-201ENST00000531194 960 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 MIR3912-201ENST00000577566 105 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 MIR5684-201ENST00000585074 65 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC016877.3-201ENST00000606778 504 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 MIR7154-201ENST00000620673 73 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 MIR6075-201ENST00000620782 95 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC039056.2-201ENST00000622261 511 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AC099786.3-201ENST00000565735 1410 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL139811.1-201ENST00000424779 2299 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 AL355578.1-201ENST00000607405 1328 ntBASIC3.95□□□□□ -1.78
CCDC3Q9BQI4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 ERCC6-202ENST00000374127 1782 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RNU6-839P-201ENST00000363347 108 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 SNORD116-12-201ENST00000384468 92 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 MIR23A-201ENST00000385245 73 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 SNORA40.2-201ENST00000390847 128 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RNU4-22P-201ENST00000411058 166 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 Z93242.1-201ENST00000427102 353 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 MTCO1P54-201ENST00000430139 712 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 GOT2P5-201ENST00000433995 546 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 PPIAP17-201ENST00000438507 471 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 RAB11AP1-201ENST00000442978 646 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 OFD1P3Y-201ENST00000453312 783 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 HMGN3P1-201ENST00000453847 193 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC092155.2-201ENST00000454675 477 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC091564.1-201ENST00000464563 479 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 VPS26AP1-201ENST00000483197 979 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 HMGB1P21-201ENST00000502313 581 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 AC020699.1-201ENST00000505161 445 ntBASIC3.94□□□□□ -1.78
CCDC3Q9BQI4 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms