Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 OR51A3P-201ENST00000413596 924 ntBASIC2.14□□□□□ -2.07
CSMD3Q7Z407 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 SETP4-201ENST00000455717 868 ntBASIC2.14□□□□□ -2.07
CSMD3Q7Z407 RPS4XP6-201ENST00000477670 797 ntBASIC2.14□□□□□ -2.07
CSMD3Q7Z407 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 CYP2C60P-201ENST00000566088 139 ntBASIC2.14□□□□□ -2.07
CSMD3Q7Z407 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC2.14□□□□□ -2.07
CSMD3Q7Z407 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 NANOGP6-201ENST00000429190 847 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 RPL37P4-201ENST00000448908 268 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AL157817.1-201ENST00000614264 790 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 MIR622-201ENST00000638396 96 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 GNG5P5-201ENST00000420444 220 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC025445.1-201ENST00000502728 300 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC008549.1-201ENST00000512900 643 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC244517.3-201ENST00000616254 1235 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 RN7SKP199-201ENST00000410325 305 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AL445528.1-201ENST00000426330 420 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 RN7SKP116-201ENST00000516902 319 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AC009812.2-201ENST00000517657 457 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 DEFB122-202ENST00000569013 197 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 MIR486-1-201ENST00000612171 68 ntBASIC2.13□□□□□ -2.07
CSMD3Q7Z407 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
CSMD3Q7Z407 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AL079305.1-201ENST00000623159 3008 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AL360182.1-201ENST00000397433 468 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 OR2X1P-201ENST00000421144 687 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC016696.1-201ENST00000446949 318 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 RPS26P15-201ENST00000488067 348 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AL392112.1-201ENST00000605115 829 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC012078.1-201ENST00000405035 1646 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 MTND5P24-201ENST00000438892 1767 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 SNORD74.4-201ENST00000364129 80 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 MIR196B-201ENST00000384852 84 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AL079342.1-201ENST00000401460 267 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC017078.1-201ENST00000416146 368 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC009977.1-201ENST00000586015 570 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 LSM1P2-201ENST00000604911 322 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC009237.17-201ENST00000618111 748 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 RNU1-112P-201ENST00000364401 164 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 RPL23AP67-201ENST00000465341 474 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 FTH1P11-201ENST00000517577 551 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 SNORD53-201ENST00000579969 78 ntBASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.12□□□□□ -2.07
CSMD3Q7Z407 AC116158.1-201ENST00000560231 2129 ntBASIC2.11□□□□□ -2.07
CSMD3Q7Z407 NEAT1-202ENST00000501122 22743 ntBASIC2.11□□□□□ -2.07
CSMD3Q7Z407 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
CSMD3Q7Z407 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
CSMD3Q7Z407 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
CSMD3Q7Z407 AL645937.1-202ENST00000421799 937 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms