Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ZNF285B-201ENST00000561698 1767 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 MGST2-201ENST00000265498 801 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
COL9A1P20849 Y_RNA.304-201ENST00000365011 112 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC6.91□□□□□ -1.3
COL9A1P20849 AC091286.1-201ENST00000431233 461 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 ACA64.1-201ENST00000459171 127 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC6.91□□□□□ -1.3
COL9A1P20849 RNU6-62P-201ENST00000516526 102 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 Y_RNA.687-201ENST00000516558 91 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 RNU6-861P-201ENST00000516745 106 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 GSTP1P1-201ENST00000548078 319 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 AC004584.2-201ENST00000570407 410 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 AC073046.2-201ENST00000604756 527 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.91□□□□□ -1.3
COL9A1P20849 AL590099.1-201ENST00000615276 138 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 LINC01748-202ENST00000634281 2864 ntTSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
COL9A1P20849 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
COL9A1P20849 AL359893.1-201ENST00000447628 1580 ntBASIC6.91□□□□□ -1.3
COL9A1P20849 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 NR1H4-206ENST00000548884 2884 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
COL9A1P20849 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC6.9□□□□□ -1.3
COL9A1P20849 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC6.9□□□□□ -1.3
COL9A1P20849 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC6.9□□□□□ -1.3
COL9A1P20849 AC079753.1-201ENST00000623243 3868 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.9□□□□□ -1.3
COL9A1P20849 AC010401.2-201ENST00000575137 4934 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC6.9□□□□□ -1.3
COL9A1P20849 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
COL9A1P20849 RNU6-1284P-201ENST00000363701 100 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.9□□□□□ -1.3
COL9A1P20849 AL080315.1-201ENST00000406055 466 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 MRM2-202ENST00000407040 582 ntTSL 3 BASIC6.9□□□□□ -1.3
COL9A1P20849 RNU6-130P-201ENST00000411112 103 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.9□□□□□ -1.3
COL9A1P20849 AL591704.1-201ENST00000432574 275 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 PPIAP13-201ENST00000434706 478 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AC004866.2-201ENST00000438285 481 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 PPIAP10-201ENST00000438675 458 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AL772161.1-201ENST00000439130 476 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 PPIAP3-201ENST00000450588 505 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AC104073.1-201ENST00000451988 151 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 RPL21P103-201ENST00000479921 488 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AC110792.1-201ENST00000491826 472 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AC026826.1-201ENST00000493002 361 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 SNX18P23-201ENST00000510867 677 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 SERF1AP1-201ENST00000514575 187 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 RNU6-346P-201ENST00000516288 111 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 Y_RNA.713-201ENST00000517013 96 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 IGKV3D-25-201ENST00000519599 235 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AL133271.1-201ENST00000538229 291 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC6.9□□□□□ -1.3
COL9A1P20849 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
COL9A1P20849 RPSAP75-201ENST00000605848 301 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 Six3os1_1.1-201ENST00000620900 87 ntBASIC6.9□□□□□ -1.3
COL9A1P20849 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL9A1P20849 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.31
COL9A1P20849 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL9A1P20849 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC6.9□□□□□ -1.31
COL9A1P20849 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL9A1P20849 AL137003.2-201ENST00000606924 2538 ntBASIC6.9□□□□□ -1.31
COL9A1P20849 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.31
COL9A1P20849 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL9A1P20849 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
COL9A1P20849 FMN2-206ENST00000543681 2902 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL9A1P20849 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
COL9A1P20849 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC6.89□□□□□ -1.31
COL9A1P20849 AC011978.2-201ENST00000569835 2054 ntBASIC6.89□□□□□ -1.31
COL9A1P20849 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
COL9A1P20849 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL9A1P20849 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
COL9A1P20849 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
COL9A1P20849 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL9A1P20849 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
COL9A1P20849 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.89□□□□□ -1.31
COL9A1P20849 SPATA31C2-201ENST00000324915 3777 ntBASIC6.89□□□□□ -1.31
COL9A1P20849 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
COL9A1P20849 MIR215-201ENST00000384858 110 ntBASIC6.89□□□□□ -1.31
COL9A1P20849 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms