Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
PRKDCP78527 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC2.27□□□□□ -2.05
PRKDCP78527 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC2.27□□□□□ -2.05
PRKDCP78527 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC2.27□□□□□ -2.05
PRKDCP78527 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.27□□□□□ -2.05
PRKDCP78527 CYP4A43P-201ENST00000568156 121 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AC015849.2-201ENST00000605738 409 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AL354950.1-201ENST00000614150 568 ntBASIC2.27□□□□□ -2.05
PRKDCP78527 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
PRKDCP78527 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.26□□□□□ -2.05
PRKDCP78527 AC017002.4-201ENST00000604721 1525 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 STK31-205ENST00000433467 3085 ntTSL 2 BASIC2.26□□□□□ -2.05
PRKDCP78527 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
PRKDCP78527 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC2.26□□□□□ -2.05
PRKDCP78527 AL591806.2-201ENST00000433122 173 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC2.26□□□□□ -2.05
PRKDCP78527 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC2.26□□□□□ -2.05
PRKDCP78527 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.26□□□□□ -2.05
PRKDCP78527 AL442163.2-201ENST00000553912 710 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
PRKDCP78527 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 MTND2P11-201ENST00000423638 648 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 AC112653.1-201ENST00000443851 386 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 RN7SL594P-201ENST00000470590 287 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC2.26□□□□□ -2.05
PRKDCP78527 AL049874.4-201ENST00000557593 255 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 ZNF658B-202ENST00000615961 3375 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 SNORA9.2-201ENST00000365361 133 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC2.26□□□□□ -2.05
PRKDCP78527 IPO8P1-201ENST00000455509 3109 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PRKDCP78527 AC005261.6-201ENST00000623072 1387 ntBASIC2.26□□□□□ -2.05
PRKDCP78527 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC2.25□□□□□ -2.05
PRKDCP78527 MAPK10-320ENST00000641462 6696 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 SNORD67-201ENST00000390833 111 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AC092809.1-201ENST00000441469 474 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC2.25□□□□□ -2.05
PRKDCP78527 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC2.25□□□□□ -2.05
PRKDCP78527 UBTFL9-201ENST00000534504 1148 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AC078814.3-201ENST00000553036 491 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC2.25□□□□□ -2.05
PRKDCP78527 AC044913.1-201ENST00000557200 430 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AC022031.1-201ENST00000585985 2593 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.25□□□□□ -2.05
PRKDCP78527 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
PRKDCP78527 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 MIR22-201ENST00000362190 85 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 RN7SKP220-201ENST00000410611 288 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AL592148.1-201ENST00000413568 445 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 YWHAEP5-201ENST00000431545 765 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 RPS24P13-201ENST00000442520 397 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 HMGN2P23-201ENST00000456759 269 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC2.25□□□□□ -2.05
PRKDCP78527 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.25□□□□□ -2.05
PRKDCP78527 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
PRKDCP78527 Y_RNA.540-201ENST00000384638 111 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 RPS3AP26-201ENST00000398259 784 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 RN7SKP56-201ENST00000410513 331 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.25□□□□□ -2.05
PRKDCP78527 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC2.25□□□□□ -2.05
PRKDCP78527 MTCO1P39-201ENST00000426148 480 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC2.25□□□□□ -2.05
PRKDCP78527 AC010468.1-201ENST00000461022 817 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC2.25□□□□□ -2.05
PRKDCP78527 APOOP4-201ENST00000513530 597 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 AC046143.2-201ENST00000609789 160 ntBASIC2.25□□□□□ -2.05
PRKDCP78527 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC2.25□□□□□ -2.05
PRKDCP78527 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC2.25□□□□□ -2.05
PRKDCP78527 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms