Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
TRAIPQ9BWF2 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
TRAIPQ9BWF2 Z73965.1-201ENST00000623412 2297 ntBASIC6.42□□□□□ -1.38
TRAIPQ9BWF2 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.42□□□□□ -1.38
TRAIPQ9BWF2 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.42□□□□□ -1.38
TRAIPQ9BWF2 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RNU5A-8P-201ENST00000364102 114 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RNU6-1103P-201ENST00000384150 107 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 Y_RNA.573-201ENST00000384763 105 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 CIR1P3-201ENST00000405137 479 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RN7SKP29-201ENST00000410957 272 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RNU6-516P-201ENST00000411381 104 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 MRPL53P1-201ENST00000414323 319 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC069157.1-201ENST00000421749 137 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 FABP7P1-201ENST00000424004 391 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RPL12P18-201ENST00000437175 325 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 KRTAP8-2P-201ENST00000440620 186 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RPS7P7-201ENST00000463499 571 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RPS3AP14-201ENST00000483907 780 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 RPS24P16-201ENST00000497294 392 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC009646.1-201ENST00000510455 318 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC009704.2-201ENST00000618739 483 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 AC091905.1-201ENST00000624400 311 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 THAP12P9-201ENST00000503971 2360 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 MTND5P3-201ENST00000438536 1800 ntBASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.41□□□□□ -1.38
TRAIPQ9BWF2 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC105074.1-201ENST00000623380 3095 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 SNORD1C-201ENST00000363315 78 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 RNU6-1085P-201ENST00000363576 107 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 RNU6-456P-201ENST00000384493 107 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 TANK-203ENST00000402568 878 ntTSL 5 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 TIMM9P1-201ENST00000436122 256 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 OR7E116P-201ENST00000448529 957 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC003071.1-201ENST00000451219 789 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 RNU7-59P-201ENST00000459101 61 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 TMEM248P1-201ENST00000510579 951 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC017037.2-201ENST00000513850 890 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC011979.2-201ENST00000527568 352 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 SUB1P2-201ENST00000556401 297 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC092325.1-201ENST00000566449 554 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 BNIP3P33-201ENST00000598912 569 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AL049767.1-202ENST00000637826 242 ntBASIC6.4□□□□□ -1.38
TRAIPQ9BWF2 AP002512.4-202ENST00000641599 4530 ntBASIC6.4□□□□□ -1.39
TRAIPQ9BWF2 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.4□□□□□ -1.39
TRAIPQ9BWF2 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.4□□□□□ -1.39
TRAIPQ9BWF2 AC004520.1-201ENST00000608362 1413 ntBASIC6.4□□□□□ -1.39
TRAIPQ9BWF2 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.4□□□□□ -1.39
TRAIPQ9BWF2 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
TRAIPQ9BWF2 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
TRAIPQ9BWF2 MFF-206ENST00000392059 1710 ntTSL 5 BASIC6.39□□□□□ -1.39
TRAIPQ9BWF2 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms