Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A5P29400 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A5P29400 AC015917.1-201ENST00000579654 510 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 NRBF2P5-201ENST00000603087 788 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A5P29400 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A5P29400 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A5P29400 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A5P29400 AC007390.2-201ENST00000606229 3803 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.81□□□□□ -1.8
COL4A5P29400 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL4A5P29400 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.81□□□□□ -1.8
COL4A5P29400 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A5P29400 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A5P29400 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL4A5P29400 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A5P29400 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A5P29400 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
COL4A5P29400 SNORA18.3-201ENST00000384122 132 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 RNA5SP39-201ENST00000411245 120 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A5P29400 AC016696.1-201ENST00000446949 318 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 RFPL4AP5-201ENST00000514977 504 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 HNRNPKP5-201ENST00000515300 253 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.81□□□□□ -1.8
COL4A5P29400 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.81□□□□□ -1.8
COL4A5P29400 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A5P29400 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.81□□□□□ -1.8
COL4A5P29400 AC018690.1-201ENST00000608144 626 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 AP003485.2-201ENST00000623636 610 ntBASIC3.81□□□□□ -1.8
COL4A5P29400 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
COL4A5P29400 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
COL4A5P29400 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A5P29400 AL136360.1-201ENST00000503377 1900 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A5P29400 RNU4-82P-201ENST00000362443 140 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 HMGB3P18-201ENST00000406327 590 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 AC012065.2-201ENST00000421295 375 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A5P29400 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.8□□□□□ -1.8
COL4A5P29400 AC011242.1-201ENST00000433596 1158 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 SKP1P1-201ENST00000438081 489 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.8□□□□□ -1.8
COL4A5P29400 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL4A5P29400 AL109933.2-201ENST00000452651 260 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A5P29400 AC087312.1-201ENST00000471411 480 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 snoU109.6-201ENST00000516831 118 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A5P29400 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A5P29400 HMGB1P6-201ENST00000569046 646 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.8□□□□□ -1.8
COL4A5P29400 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A5P29400 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A5P29400 CR381670.1-201ENST00000624291 1693 ntBASIC3.8□□□□□ -1.8
COL4A5P29400 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.79□□□□□ -1.8
COL4A5P29400 AL031679.1-201ENST00000400616 525 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.79□□□□□ -1.8
COL4A5P29400 AL139281.1-201ENST00000422120 335 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 ETF1P3-201ENST00000430422 1160 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A5P29400 SLC31A1P1-201ENST00000451221 567 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 NPM1P13-201ENST00000452663 865 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.79□□□□□ -1.8
COL4A5P29400 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC3.79□□□□□ -1.8
COL4A5P29400 RPL5P30-201ENST00000465511 891 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 AC068724.1-201ENST00000487100 792 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 SCARNA20.6-201ENST00000517251 106 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 CYCSP39-201ENST00000565821 309 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.79□□□□□ -1.8
COL4A5P29400 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.79□□□□□ -1.8
COL4A5P29400 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
COL4A5P29400 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL4A5P29400 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 OR5BR1P-201ENST00000524992 1330 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL4A5P29400 AL359693.1-201ENST00000614959 2407 ntBASIC3.79□□□□□ -1.8
COL4A5P29400 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A5P29400 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
COL4A5P29400 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL4A5P29400 AC018555.1-201ENST00000567548 1980 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
COL4A5P29400 SNORA71.1-201ENST00000364523 117 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 NPM1P38-201ENST00000403835 865 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 AL391417.1-201ENST00000404100 426 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 RN7SL93P-201ENST00000463035 293 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 AC117440.1-201ENST00000474107 571 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 AC025445.1-201ENST00000502728 300 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.78□□□□□ -1.8
COL4A5P29400 AL157394.1-201ENST00000562983 1224 ntBASIC3.78□□□□□ -1.8
COL4A5P29400 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.78□□□□□ -1.8
COL4A5P29400 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms