Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.61□□□□□ -1.35
RFX1P22670 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
RFX1P22670 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.61□□□□□ -1.35
RFX1P22670 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.61□□□□□ -1.35
RFX1P22670 RPS15AP12-201ENST00000419498 388 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.61□□□□□ -1.35
RFX1P22670 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 RBM6-203ENST00000421682 684 ntTSL 2 BASIC6.61□□□□□ -1.35
RFX1P22670 RPL36AP53-201ENST00000432891 316 ntBASIC6.61□□□□□ -1.35
RFX1P22670 CBWD4P-201ENST00000445695 655 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC007677.1-201ENST00000445757 515 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC6.61□□□□□ -1.35
RFX1P22670 SLC25A18P1-201ENST00000449385 454 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.61□□□□□ -1.35
RFX1P22670 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC6.61□□□□□ -1.35
RFX1P22670 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC6.61□□□□□ -1.35
RFX1P22670 GAPDHP56-201ENST00000506031 988 ntBASIC6.61□□□□□ -1.35
RFX1P22670 MTCO3P9-201ENST00000506989 781 ntBASIC6.61□□□□□ -1.35
RFX1P22670 TMEM248P1-201ENST00000510579 951 ntBASIC6.61□□□□□ -1.35
RFX1P22670 CYCSP22-201ENST00000517555 339 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC6.61□□□□□ -1.35
RFX1P22670 IGHVIII-67-4-201ENST00000524281 296 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC024224.1-201ENST00000538284 609 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC018552.3-201ENST00000567416 561 ntBASIC6.61□□□□□ -1.35
RFX1P22670 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC6.61□□□□□ -1.35
RFX1P22670 AC105224.1-201ENST00000587055 421 ntBASIC6.61□□□□□ -1.35
RFX1P22670 MIR132-201ENST00000591554 101 ntBASIC6.61□□□□□ -1.35
RFX1P22670 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.61□□□□□ -1.35
RFX1P22670 AP001429.1-201ENST00000602568 530 ntBASIC6.61□□□□□ -1.35
RFX1P22670 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC6.61□□□□□ -1.35
RFX1P22670 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
RFX1P22670 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.61□□□□□ -1.35
RFX1P22670 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.61□□□□□ -1.35
RFX1P22670 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
RFX1P22670 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
RFX1P22670 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 AC091046.3-201ENST00000631455 1574 ntBASIC6.61□□□□□ -1.35
RFX1P22670 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
RFX1P22670 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
RFX1P22670 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
RFX1P22670 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
RFX1P22670 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 RNU6-223P-201ENST00000362830 107 ntBASIC6.6□□□□□ -1.35
RFX1P22670 RNU6-74P-201ENST00000384235 107 ntBASIC6.6□□□□□ -1.35
RFX1P22670 Y_RNA.460-201ENST00000384255 102 ntBASIC6.6□□□□□ -1.35
RFX1P22670 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
RFX1P22670 RNU2-9P-201ENST00000410194 145 ntBASIC6.6□□□□□ -1.35
RFX1P22670 RPS7P8-201ENST00000418311 581 ntBASIC6.6□□□□□ -1.35
RFX1P22670 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.6□□□□□ -1.35
RFX1P22670 TIMM9P1-201ENST00000436122 256 ntBASIC6.6□□□□□ -1.35
RFX1P22670 MTND1P9-201ENST00000453775 944 ntBASIC6.6□□□□□ -1.35
RFX1P22670 SNORD121B-201ENST00000458838 81 ntBASIC6.6□□□□□ -1.35
RFX1P22670 PPIAP21-201ENST00000464473 501 ntBASIC6.6□□□□□ -1.35
RFX1P22670 RPS20P21-201ENST00000466859 343 ntBASIC6.6□□□□□ -1.35
RFX1P22670 RPL23AP40-201ENST00000487630 390 ntBASIC6.6□□□□□ -1.35
RFX1P22670 AC093278.1-201ENST00000494700 600 ntBASIC6.6□□□□□ -1.35
RFX1P22670 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC6.6□□□□□ -1.35
RFX1P22670 RNA5SP434-201ENST00000516647 121 ntBASIC6.6□□□□□ -1.35
RFX1P22670 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.6□□□□□ -1.35
RFX1P22670 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.6□□□□□ -1.35
RFX1P22670 OR5BN1P-201ENST00000532955 829 ntBASIC6.6□□□□□ -1.35
RFX1P22670 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 AC007225.2-201ENST00000562529 256 ntBASIC6.6□□□□□ -1.35
RFX1P22670 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.6□□□□□ -1.35
RFX1P22670 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.6□□□□□ -1.35
RFX1P22670 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 AC245014.3-201ENST00000618589 347 ntBASIC6.6□□□□□ -1.35
RFX1P22670 AC090574.1-201ENST00000623186 233 ntBASIC6.6□□□□□ -1.35
RFX1P22670 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.6□□□□□ -1.35
RFX1P22670 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
RFX1P22670 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
RFX1P22670 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RFX1P22670 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
RFX1P22670 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
RFX1P22670 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
RFX1P22670 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.59□□□□□ -1.35
RFX1P22670 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
RFX1P22670 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms