Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MIR7641-1-201ENST00000627518 61 ntBASIC3.71□□□□□ -1.82
LSM1O15116 MIR4278-201ENST00000636094 69 ntBASIC3.71□□□□□ -1.82
LSM1O15116 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LSM1O15116 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.71□□□□□ -1.82
LSM1O15116 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 AL592494.2-201ENST00000425455 1548 ntBASIC3.7□□□□□ -1.82
LSM1O15116 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.7□□□□□ -1.82
LSM1O15116 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 HSPE1P8-201ENST00000406997 288 ntBASIC3.7□□□□□ -1.82
LSM1O15116 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.7□□□□□ -1.82
LSM1O15116 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.7□□□□□ -1.82
LSM1O15116 RNU4-6P-201ENST00000410804 122 ntBASIC3.7□□□□□ -1.82
LSM1O15116 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 FO393419.3-201ENST00000428741 282 ntBASIC3.7□□□□□ -1.82
LSM1O15116 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.7□□□□□ -1.82
LSM1O15116 TPT1P13-201ENST00000449760 499 ntBASIC3.7□□□□□ -1.82
LSM1O15116 RPL21P11-201ENST00000461458 483 ntBASIC3.7□□□□□ -1.82
LSM1O15116 AC146507.1-201ENST00000468335 354 ntBASIC3.7□□□□□ -1.82
LSM1O15116 AC126121.1-201ENST00000482313 553 ntBASIC3.7□□□□□ -1.82
LSM1O15116 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.7□□□□□ -1.82
LSM1O15116 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.7□□□□□ -1.82
LSM1O15116 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.7□□□□□ -1.82
LSM1O15116 MTND2P26-201ENST00000528255 1029 ntBASIC3.7□□□□□ -1.82
LSM1O15116 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.7□□□□□ -1.82
LSM1O15116 KPNA2P3-201ENST00000584190 848 ntBASIC3.7□□□□□ -1.82
LSM1O15116 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 NTAN1P1-201ENST00000603150 646 ntBASIC3.7□□□□□ -1.82
LSM1O15116 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.7□□□□□ -1.82
LSM1O15116 AC090506.2-201ENST00000624521 419 ntBASIC3.7□□□□□ -1.82
LSM1O15116 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.7□□□□□ -1.82
LSM1O15116 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.7□□□□□ -1.82
LSM1O15116 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LSM1O15116 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 SAGE4P-201ENST00000442271 3381 ntBASIC3.69□□□□□ -1.82
LSM1O15116 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 AL356095.1-201ENST00000417217 199 ntBASIC3.69□□□□□ -1.82
LSM1O15116 Z97055.1-201ENST00000419730 712 ntBASIC3.69□□□□□ -1.82
LSM1O15116 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.69□□□□□ -1.82
LSM1O15116 OR4F13P-201ENST00000428478 931 ntBASIC3.69□□□□□ -1.82
LSM1O15116 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.69□□□□□ -1.82
LSM1O15116 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.69□□□□□ -1.82
LSM1O15116 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.69□□□□□ -1.82
LSM1O15116 DNAJC19P1-201ENST00000455312 319 ntBASIC3.69□□□□□ -1.82
LSM1O15116 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.69□□□□□ -1.82
LSM1O15116 PTGES3P3-201ENST00000511479 482 ntBASIC3.69□□□□□ -1.82
LSM1O15116 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.69□□□□□ -1.82
LSM1O15116 RNU6-751P-201ENST00000516382 101 ntBASIC3.69□□□□□ -1.82
LSM1O15116 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC3.69□□□□□ -1.82
LSM1O15116 MRPL49P2-201ENST00000521066 465 ntBASIC3.69□□□□□ -1.82
LSM1O15116 C1GALT1P3-201ENST00000522049 819 ntBASIC3.69□□□□□ -1.82
LSM1O15116 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 AC067805.1-201ENST00000559344 470 ntBASIC3.69□□□□□ -1.82
LSM1O15116 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC3.69□□□□□ -1.82
LSM1O15116 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.69□□□□□ -1.82
LSM1O15116 AC023575.1-201ENST00000580510 358 ntBASIC3.69□□□□□ -1.82
LSM1O15116 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.69□□□□□ -1.82
LSM1O15116 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.69□□□□□ -1.82
LSM1O15116 RNU4-89P-201ENST00000607443 133 ntBASIC3.69□□□□□ -1.82
LSM1O15116 AC018816.2-201ENST00000621460 353 ntBASIC3.69□□□□□ -1.82
LSM1O15116 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
LSM1O15116 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
LSM1O15116 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
LSM1O15116 AC007496.3-201ENST00000624987 3443 ntBASIC3.69□□□□□ -1.82
LSM1O15116 RLIMP1-201ENST00000339626 1680 ntBASIC3.68□□□□□ -1.82
LSM1O15116 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LSM1O15116 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
LSM1O15116 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
LSM1O15116 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
LSM1O15116 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
LSM1O15116 TANK-205ENST00000405852 2155 ntTSL 5 BASIC3.68□□□□□ -1.82
LSM1O15116 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.68□□□□□ -1.82
LSM1O15116 RNA5SP443-201ENST00000363083 132 ntBASIC3.68□□□□□ -1.82
LSM1O15116 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.68□□□□□ -1.82
LSM1O15116 AL691447.1-201ENST00000419456 387 ntBASIC3.68□□□□□ -1.82
LSM1O15116 Z74696.2-201ENST00000436514 498 ntBASIC3.68□□□□□ -1.82
LSM1O15116 AC097499.1-201ENST00000444277 208 ntBASIC3.68□□□□□ -1.82
LSM1O15116 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.68□□□□□ -1.82
LSM1O15116 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms