Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 LARP1BP1-201ENST00000506036 1359 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 SAMMSON-213ENST00000641336 1521 ntBASIC4.87□□□□□ -1.63
CCDC140Q96MF4 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC4.87□□□□□ -1.63
CCDC140Q96MF4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RNU6-552P-201ENST00000362869 119 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RNU6-179P-201ENST00000363350 107 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RNA5SP346-201ENST00000363541 121 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 SNORA70H-201ENST00000383910 135 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 SNORA70J-201ENST00000384182 135 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL157702.1-201ENST00000398764 426 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL583835.1-201ENST00000399570 407 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 TXNP7-201ENST00000406296 293 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RNU4-26P-201ENST00000410270 107 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RPS17P17-201ENST00000419392 409 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL590639.1-201ENST00000456484 337 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RANP2-201ENST00000456833 229 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RPL36AP13-201ENST00000457490 317 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL162395.1-201ENST00000457882 422 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 HMGN2P26-201ENST00000463169 339 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 RPA2P3-201ENST00000533268 770 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 SCOCP1-201ENST00000554676 349 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 PSMA3P-201ENST00000555485 635 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AC133644.2-201ENST00000608142 540 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AL122023.1-201ENST00000622847 530 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 SHQ1P1-201ENST00000437111 1544 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 OR55B1P-203ENST00000641518 2602 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 LINC01613-201ENST00000561476 2780 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 DMD-205ENST00000359836 7339 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.86□□□□□ -1.63
CCDC140Q96MF4 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
CCDC140Q96MF4 AP001541.1-201ENST00000623322 1904 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 STX3-208ENST00000641815 3236 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 AC073343.1-201ENST00000328239 651 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CCDC140Q96MF4 RNU5E-6P-201ENST00000365574 115 ntBASIC4.85□□□□□ -1.63
CCDC140Q96MF4 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms