Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SDHD-206ENST00000528182 754 ntTSL 3 BASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 SPDYE13P-201ENST00000445314 798 ntBASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC36.72■■■■□ 3.47
SHROOM4Q9ULL8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 STARP1-201ENST00000397973 869 ntBASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
SHROOM4Q9ULL8 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 FXN-203ENST00000396366 922 ntTSL 2 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC36.7■■■■□ 3.47
SHROOM4Q9ULL8 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 AC004870.1-201ENST00000315132 882 ntBASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
SHROOM4Q9ULL8 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 KRT8P8-201ENST00000434750 1448 ntBASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 NEK4P2-201ENST00000580004 1012 ntBASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC36.68■■■■□ 3.46
SHROOM4Q9ULL8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC36.67■■■■□ 3.46
SHROOM4Q9ULL8 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 AP001271.2-201ENST00000624018 1556 ntBASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC36.66■■■■□ 3.46
SHROOM4Q9ULL8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 AC099778.1-201ENST00000568593 1911 ntBASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC36.65■■■■□ 3.46
SHROOM4Q9ULL8 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC36.64■■■■□ 3.46
SHROOM4Q9ULL8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC36.64■■■■□ 3.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms