Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 CROCCP3-202ENST00000420820 1947 ntBASIC19.93■□□□□ 0.78
PCDH9Q9HC56 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PCDH9Q9HC56 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 AL049812.1-201ENST00000432563 2267 ntBASIC19.92■□□□□ 0.78
PCDH9Q9HC56 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 AC120498.9-201ENST00000339021 3867 ntBASIC19.92■□□□□ 0.78
PCDH9Q9HC56 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
PCDH9Q9HC56 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 AC233263.1-201ENST00000578059 224 ntBASIC19.91■□□□□ 0.78
PCDH9Q9HC56 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.91■□□□□ 0.78
PCDH9Q9HC56 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 AC073648.6-201ENST00000641589 218 ntBASIC19.9■□□□□ 0.78
PCDH9Q9HC56 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.9■□□□□ 0.78
PCDH9Q9HC56 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
PCDH9Q9HC56 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.78
PCDH9Q9HC56 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PCDH9Q9HC56 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms