Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 DUX4L16-201ENST00000555130 1264 ntBASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC28BQ9BUN5 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 PRORSD1P-202ENST00000563365 2154 ntBASIC18.75■□□□□ 0.59
CCDC28BQ9BUN5 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 FP475955.4-201ENST00000623131 1990 ntBASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 AC008694.1-202ENST00000636953 945 ntBASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC28BQ9BUN5 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 CYP2T1P-201ENST00000432607 1285 ntBASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC28BQ9BUN5 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms