Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
SH3RF1Q7Z6J0 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.13■■□□□ 1.13
SH3RF1Q7Z6J0 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 KSR1P1-201ENST00000446298 240 ntBASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 NMU-205ENST00000511469 756 ntTSL 3 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SH3RF1Q7Z6J0 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 NIFKP9-201ENST00000419265 221 ntBASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 AL121894.2-201ENST00000602977 491 ntBASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.13
SH3RF1Q7Z6J0 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 KRT16P1-201ENST00000399124 1418 ntBASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 UPK3BP1-201ENST00000428678 509 ntBASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SH3RF1Q7Z6J0 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms