Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 AC092119.3-201ENST00000612618 583 ntBASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CNKSR3Q6P9H4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 AC020907.5-201ENST00000624372 1936 ntBASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 TSPY21P-201ENST00000433481 731 ntBASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 TSPY23P-201ENST00000440136 739 ntBASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 AC034232.1-201ENST00000506026 1064 ntBASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CNKSR3Q6P9H4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 RASA4DP-201ENST00000460726 1199 ntBASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 MIR3652-201ENST00000579335 131 ntBASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CNKSR3Q6P9H4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CNKSR3Q6P9H4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CNKSR3Q6P9H4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
CNKSR3Q6P9H4 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CNKSR3Q6P9H4 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CNKSR3Q6P9H4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms