Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.54■□□□□ 0.88
USP41Q3LFD5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP41Q3LFD5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.54■□□□□ 0.88
USP41Q3LFD5 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP41Q3LFD5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP41Q3LFD5 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP41Q3LFD5 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 AC141257.4-201ENST00000634557 245 ntBASIC20.53■□□□□ 0.88
USP41Q3LFD5 AC136944.6-201ENST00000634818 245 ntBASIC20.53■□□□□ 0.88
USP41Q3LFD5 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP41Q3LFD5 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP41Q3LFD5 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP41Q3LFD5 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP41Q3LFD5 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.53■□□□□ 0.88
USP41Q3LFD5 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP41Q3LFD5 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP41Q3LFD5 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP41Q3LFD5 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP41Q3LFD5 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 YBX1P2-201ENST00000489612 999 ntBASIC20.52■□□□□ 0.88
USP41Q3LFD5 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP41Q3LFD5 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP41Q3LFD5 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP41Q3LFD5 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
USP41Q3LFD5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP41Q3LFD5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 FAM8A6P-201ENST00000407496 1135 ntBASIC20.51■□□□□ 0.87
USP41Q3LFD5 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 TSPY5P-201ENST00000426936 936 ntBASIC20.51■□□□□ 0.87
USP41Q3LFD5 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.51■□□□□ 0.87
USP41Q3LFD5 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP41Q3LFD5 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP41Q3LFD5 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP41Q3LFD5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP41Q3LFD5 AC007952.6-201ENST00000573168 2673 ntBASIC20.5■□□□□ 0.87
USP41Q3LFD5 AC003957.1-201ENST00000625108 2673 ntBASIC20.5■□□□□ 0.87
USP41Q3LFD5 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP41Q3LFD5 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.5■□□□□ 0.87
USP41Q3LFD5 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms