Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMK1P53667 AL391422.3-201ENST00000603791 2761 ntBASIC19.1■□□□□ 0.65
LIMK1P53667 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
LIMK1P53667 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.09■□□□□ 0.65
LIMK1P53667 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.09■□□□□ 0.65
LIMK1P53667 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
LIMK1P53667 AC083849.1-201ENST00000615227 514 ntBASIC19.09■□□□□ 0.65
LIMK1P53667 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.09■□□□□ 0.65
LIMK1P53667 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMK1P53667 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMK1P53667 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMK1P53667 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LIMK1P53667 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
LIMK1P53667 KRT8P10-201ENST00000450021 1447 ntBASIC19.08■□□□□ 0.65
LIMK1P53667 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIMK1P53667 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
LIMK1P53667 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIMK1P53667 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.08■□□□□ 0.65
LIMK1P53667 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
LIMK1P53667 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
LIMK1P53667 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
LIMK1P53667 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIMK1P53667 AC116351.2-201ENST00000606540 1585 ntBASIC19.08■□□□□ 0.65
LIMK1P53667 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.08■□□□□ 0.64
LIMK1P53667 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 NPAP1P7-201ENST00000613027 823 ntBASIC19.08■□□□□ 0.64
LIMK1P53667 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.08■□□□□ 0.64
LIMK1P53667 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMK1P53667 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMK1P53667 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMK1P53667 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
LIMK1P53667 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.08■□□□□ 0.64
LIMK1P53667 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIMK1P53667 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.08■□□□□ 0.64
LIMK1P53667 KRT8P17-201ENST00000453110 1448 ntBASIC19.08■□□□□ 0.64
LIMK1P53667 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
LIMK1P53667 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LIMK1P53667 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.07■□□□□ 0.64
LIMK1P53667 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 AC112907.2-201ENST00000448639 330 ntBASIC19.07■□□□□ 0.64
LIMK1P53667 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.07■□□□□ 0.64
LIMK1P53667 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 MIR3652-201ENST00000579335 131 ntBASIC19.07■□□□□ 0.64
LIMK1P53667 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 AC004263.2-201ENST00000617183 678 ntBASIC19.07■□□□□ 0.64
LIMK1P53667 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.07■□□□□ 0.64
LIMK1P53667 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.07■□□□□ 0.64
LIMK1P53667 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
LIMK1P53667 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIMK1P53667 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.07■□□□□ 0.64
LIMK1P53667 TFP1-202ENST00000475455 1573 ntBASIC19.06■□□□□ 0.64
LIMK1P53667 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMK1P53667 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.06■□□□□ 0.64
LIMK1P53667 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LIMK1P53667 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMK1P53667 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMK1P53667 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.06■□□□□ 0.64
LIMK1P53667 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
LIMK1P53667 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIMK1P53667 GABARAPL3-202ENST00000624044 1851 ntBASIC19.06■□□□□ 0.64
LIMK1P53667 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIMK1P53667 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms