Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FAAHP1-202ENST00000446499 1238 ntBASIC19.25■□□□□ 0.67
CXCL12P48061 BX276092.5-203ENST00000456199 560 ntBASIC19.25■□□□□ 0.67
CXCL12P48061 RASA4DP-201ENST00000460726 1199 ntBASIC19.25■□□□□ 0.67
CXCL12P48061 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.25■□□□□ 0.67
CXCL12P48061 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
CXCL12P48061 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.25■□□□□ 0.67
CXCL12P48061 AC011498.5-201ENST00000592027 486 ntBASIC19.25■□□□□ 0.67
CXCL12P48061 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.25■□□□□ 0.67
CXCL12P48061 AL121672.3-201ENST00000608644 468 ntBASIC19.25■□□□□ 0.67
CXCL12P48061 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CXCL12P48061 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CXCL12P48061 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CXCL12P48061 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.24■□□□□ 0.67
CXCL12P48061 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CXCL12P48061 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.24■□□□□ 0.67
CXCL12P48061 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.24■□□□□ 0.67
CXCL12P48061 AC079834.2-201ENST00000609776 1949 ntBASIC19.24■□□□□ 0.67
CXCL12P48061 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CXCL12P48061 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.24■□□□□ 0.67
CXCL12P48061 AC092597.1-201ENST00000487352 616 ntBASIC19.24■□□□□ 0.67
CXCL12P48061 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.24■□□□□ 0.67
CXCL12P48061 CR769767.2-201ENST00000622735 460 ntBASIC19.24■□□□□ 0.67
CXCL12P48061 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CXCL12P48061 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CXCL12P48061 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.23■□□□□ 0.67
CXCL12P48061 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.23■□□□□ 0.67
CXCL12P48061 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.23■□□□□ 0.67
CXCL12P48061 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.23■□□□□ 0.67
CXCL12P48061 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.23■□□□□ 0.67
CXCL12P48061 KRT17P6-201ENST00000453795 1220 ntBASIC19.23■□□□□ 0.67
CXCL12P48061 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.23■□□□□ 0.67
CXCL12P48061 MIR4674-201ENST00000582457 87 ntBASIC19.23■□□□□ 0.67
CXCL12P48061 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.23■□□□□ 0.67
CXCL12P48061 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CXCL12P48061 KRT8P10-201ENST00000450021 1447 ntBASIC19.23■□□□□ 0.67
CXCL12P48061 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.23■□□□□ 0.67
CXCL12P48061 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CXCL12P48061 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CXCL12P48061 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CXCL12P48061 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 AC016734.2-201ENST00000624325 1377 ntBASIC19.22■□□□□ 0.67
CXCL12P48061 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.22■□□□□ 0.67
CXCL12P48061 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.22■□□□□ 0.67
CXCL12P48061 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.22■□□□□ 0.67
CXCL12P48061 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.22■□□□□ 0.67
CXCL12P48061 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CXCL12P48061 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL12P48061 PKD1P6-201ENST00000343738 4769 ntBASIC19.21■□□□□ 0.67
CXCL12P48061 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL12P48061 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.21■□□□□ 0.67
CXCL12P48061 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL12P48061 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL12P48061 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.21■□□□□ 0.67
CXCL12P48061 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.21■□□□□ 0.67
CXCL12P48061 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.21■□□□□ 0.67
CXCL12P48061 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.21■□□□□ 0.67
CXCL12P48061 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CXCL12P48061 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL12P48061 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CXCL12P48061 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL12P48061 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.21■□□□□ 0.67
CXCL12P48061 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CXCL12P48061 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CXCL12P48061 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.2■□□□□ 0.66
CXCL12P48061 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CXCL12P48061 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms