Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
NKX2-1P43699 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NKX2-1P43699 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
NKX2-1P43699 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX2-1P43699 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
NKX2-1P43699 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
NKX2-1P43699 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.8■□□□□ 0.12
NKX2-1P43699 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC15.8■□□□□ 0.12
NKX2-1P43699 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
NKX2-1P43699 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
NKX2-1P43699 COX20-201ENST00000366528 568 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX2-1P43699 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX2-1P43699 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
NKX2-1P43699 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC15.8■□□□□ 0.12
NKX2-1P43699 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX2-1P43699 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
NKX2-1P43699 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX2-1P43699 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX2-1P43699 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NKX2-1P43699 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.8■□□□□ 0.12
NKX2-1P43699 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
NKX2-1P43699 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.79■□□□□ 0.12
NKX2-1P43699 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC15.79■□□□□ 0.12
NKX2-1P43699 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.79■□□□□ 0.12
NKX2-1P43699 GAS2L1P2-201ENST00000436355 1356 ntBASIC15.79■□□□□ 0.12
NKX2-1P43699 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.79■□□□□ 0.12
NKX2-1P43699 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 AK1-201ENST00000223836 736 ntTSL 3 BASIC15.79■□□□□ 0.12
NKX2-1P43699 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
NKX2-1P43699 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
NKX2-1P43699 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.79■□□□□ 0.12
NKX2-1P43699 AC093525.10-201ENST00000625130 1569 ntBASIC15.79■□□□□ 0.12
NKX2-1P43699 LTB4R2-202ENST00000528054 3092 ntBASIC15.79■□□□□ 0.12
NKX2-1P43699 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC15.78■□□□□ 0.12
NKX2-1P43699 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 USP39-202ENST00000409025 1946 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX2-1P43699 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 AL133373.2-201ENST00000623187 2828 ntBASIC15.78■□□□□ 0.12
NKX2-1P43699 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX2-1P43699 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC15.78■□□□□ 0.12
NKX2-1P43699 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
NKX2-1P43699 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.78■□□□□ 0.12
NKX2-1P43699 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
NKX2-1P43699 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
NKX2-1P43699 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms