Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.66■□□□□ 0.42
RFC3P40938 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.66■□□□□ 0.42
RFC3P40938 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.66■□□□□ 0.42
RFC3P40938 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.66■□□□□ 0.42
RFC3P40938 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RFC3P40938 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RFC3P40938 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.66■□□□□ 0.42
RFC3P40938 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.66■□□□□ 0.42
RFC3P40938 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFC3P40938 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.65■□□□□ 0.42
RFC3P40938 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.65■□□□□ 0.42
RFC3P40938 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RFC3P40938 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.65■□□□□ 0.42
RFC3P40938 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.65■□□□□ 0.42
RFC3P40938 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.65■□□□□ 0.42
RFC3P40938 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
RFC3P40938 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.65■□□□□ 0.42
RFC3P40938 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.65■□□□□ 0.42
RFC3P40938 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.65■□□□□ 0.42
RFC3P40938 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.65■□□□□ 0.42
RFC3P40938 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.65■□□□□ 0.42
RFC3P40938 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RFC3P40938 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFC3P40938 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.65■□□□□ 0.42
RFC3P40938 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.65■□□□□ 0.42
RFC3P40938 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
RFC3P40938 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.64■□□□□ 0.42
RFC3P40938 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
RFC3P40938 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.64■□□□□ 0.41
RFC3P40938 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
RFC3P40938 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
RFC3P40938 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
RFC3P40938 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.64■□□□□ 0.41
RFC3P40938 AC004951.3-201ENST00000418645 1148 ntBASIC17.64■□□□□ 0.41
RFC3P40938 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
RFC3P40938 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
RFC3P40938 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
RFC3P40938 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 AC130371.2-201ENST00000619443 611 ntBASIC17.64■□□□□ 0.41
RFC3P40938 KRT18P22-201ENST00000402024 1347 ntBASIC17.64■□□□□ 0.41
RFC3P40938 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.64■□□□□ 0.41
RFC3P40938 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.64■□□□□ 0.41
RFC3P40938 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
RFC3P40938 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFC3P40938 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.63■□□□□ 0.41
RFC3P40938 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.63■□□□□ 0.41
RFC3P40938 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.63■□□□□ 0.41
RFC3P40938 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.63■□□□□ 0.41
RFC3P40938 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.63■□□□□ 0.41
RFC3P40938 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.63■□□□□ 0.41
RFC3P40938 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.63■□□□□ 0.41
RFC3P40938 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.63■□□□□ 0.41
RFC3P40938 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RFC3P40938 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFC3P40938 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFC3P40938 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFC3P40938 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFC3P40938 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RFC3P40938 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RFC3P40938 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.62■□□□□ 0.41
RFC3P40938 FAM207BP-201ENST00000447172 505 ntBASIC17.62■□□□□ 0.41
RFC3P40938 ECEL1P2-202ENST00000465689 757 ntBASIC17.62■□□□□ 0.41
RFC3P40938 AC091390.4-202ENST00000476426 537 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms