Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DMBP28068 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC14.7□□□□□ -0.06
HLA-DMBP28068 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 BET1L-207ENST00000529614 560 ntTSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DMBP28068 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HLA-DMBP28068 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 GGT1-206ENST00000404223 952 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 FAM201B-201ENST00000458407 597 ntBASIC14.68□□□□□ -0.06
HLA-DMBP28068 RPS2P52-201ENST00000469610 820 ntBASIC14.68□□□□□ -0.06
HLA-DMBP28068 RHEB-204ENST00000472642 900 ntTSL 3 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 AC091874.3-201ENST00000512672 1195 ntBASIC14.68□□□□□ -0.06
HLA-DMBP28068 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DMBP28068 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DMBP28068 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 NEFHP1-201ENST00000412845 2629 ntBASIC14.67□□□□□ -0.06
HLA-DMBP28068 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 MIR4651-201ENST00000582622 73 ntBASIC14.67□□□□□ -0.06
HLA-DMBP28068 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC14.67□□□□□ -0.06
HLA-DMBP28068 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DMBP28068 ZNF815P-204ENST00000434898 1737 ntBASIC14.66□□□□□ -0.06
HLA-DMBP28068 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DMBP28068 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms