Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL5A3P25940 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC24.43■■□□□ 1.5
COL5A3P25940 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL5A3P25940 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.43■■□□□ 1.5
COL5A3P25940 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC24.43■■□□□ 1.5
COL5A3P25940 AC111152.3-201ENST00000569699 673 ntBASIC24.43■■□□□ 1.5
COL5A3P25940 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL5A3P25940 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC24.43■■□□□ 1.5
COL5A3P25940 AL691432.3-201ENST00000621860 400 ntBASIC24.43■■□□□ 1.5
COL5A3P25940 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL5A3P25940 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC24.43■■□□□ 1.5
COL5A3P25940 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
COL5A3P25940 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC24.43■■□□□ 1.5
COL5A3P25940 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL5A3P25940 LINC00565-201ENST00000562710 2331 ntBASIC24.43■■□□□ 1.5
COL5A3P25940 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC24.42■■□□□ 1.5
COL5A3P25940 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL5A3P25940 AC104417.2-201ENST00000562989 1793 ntBASIC24.42■■□□□ 1.5
COL5A3P25940 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL5A3P25940 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC24.42■■□□□ 1.5
COL5A3P25940 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
COL5A3P25940 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL5A3P25940 AC092597.1-201ENST00000487352 616 ntBASIC24.42■■□□□ 1.5
COL5A3P25940 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC24.42■■□□□ 1.5
COL5A3P25940 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC24.42■■□□□ 1.5
COL5A3P25940 SDHD-206ENST00000528182 754 ntTSL 3 BASIC24.42■■□□□ 1.5
COL5A3P25940 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL5A3P25940 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL5A3P25940 DET1-207ENST00000564406 2315 ntTSL 2 BASIC24.42■■□□□ 1.5
COL5A3P25940 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC24.42■■□□□ 1.5
COL5A3P25940 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL5A3P25940 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL5A3P25940 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL5A3P25940 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC24.42■■□□□ 1.5
COL5A3P25940 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
COL5A3P25940 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC24.41■■□□□ 1.5
COL5A3P25940 RN7SL510P-201ENST00000581311 263 ntBASIC24.41■■□□□ 1.5
COL5A3P25940 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC24.41■■□□□ 1.5
COL5A3P25940 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
COL5A3P25940 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
COL5A3P25940 GPAT2P1-201ENST00000444924 1672 ntBASIC24.41■■□□□ 1.5
COL5A3P25940 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC24.41■■□□□ 1.5
COL5A3P25940 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
COL5A3P25940 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
COL5A3P25940 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL5A3P25940 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
COL5A3P25940 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC24.41■■□□□ 1.5
COL5A3P25940 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
COL5A3P25940 PRELID1P1-202ENST00000567272 903 ntBASIC24.41■■□□□ 1.5
COL5A3P25940 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC24.41■■□□□ 1.5
COL5A3P25940 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
COL5A3P25940 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 ANKRD18DP-204ENST00000455355 1975 ntBASIC24.4■■□□□ 1.5
COL5A3P25940 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC24.4■■□□□ 1.5
COL5A3P25940 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC24.4■■□□□ 1.5
COL5A3P25940 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
COL5A3P25940 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC24.4■■□□□ 1.5
COL5A3P25940 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 PVRIG2P-201ENST00000435460 978 ntBASIC24.4■■□□□ 1.5
COL5A3P25940 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.4■■□□□ 1.5
COL5A3P25940 AC092119.3-201ENST00000612618 583 ntBASIC24.4■■□□□ 1.5
COL5A3P25940 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC24.4■■□□□ 1.5
COL5A3P25940 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL5A3P25940 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC24.39■■□□□ 1.5
COL5A3P25940 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC24.39■■□□□ 1.5
COL5A3P25940 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC24.39■■□□□ 1.5
COL5A3P25940 SKP2-204ENST00000508514 821 ntTSL 3 BASIC24.39■■□□□ 1.5
COL5A3P25940 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC24.39■■□□□ 1.5
COL5A3P25940 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL5A3P25940 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL5A3P25940 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
COL5A3P25940 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC24.39■■□□□ 1.49
COL5A3P25940 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC24.39■■□□□ 1.49
COL5A3P25940 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL5A3P25940 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL5A3P25940 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms