Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RFX1P22670 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.01■□□□□ 0.95
RFX1P22670 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RFX1P22670 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RFX1P22670 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
RFX1P22670 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.01■□□□□ 0.95
RFX1P22670 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RFX1P22670 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RFX1P22670 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.01■□□□□ 0.95
RFX1P22670 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.01■□□□□ 0.95
RFX1P22670 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
RFX1P22670 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC21.01■□□□□ 0.95
RFX1P22670 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RFX1P22670 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.01■□□□□ 0.95
RFX1P22670 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
RFX1P22670 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RFX1P22670 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.01■□□□□ 0.95
RFX1P22670 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
RFX1P22670 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21■□□□□ 0.95
RFX1P22670 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RFX1P22670 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21■□□□□ 0.95
RFX1P22670 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 TSPY15P-201ENST00000457163 923 ntBASIC21■□□□□ 0.95
RFX1P22670 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
RFX1P22670 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RFX1P22670 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21■□□□□ 0.95
RFX1P22670 AC097493.4-201ENST00000641197 219 ntBASIC21■□□□□ 0.95
RFX1P22670 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
RFX1P22670 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RFX1P22670 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RFX1P22670 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.99■□□□□ 0.95
RFX1P22670 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.99■□□□□ 0.95
RFX1P22670 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.99■□□□□ 0.95
RFX1P22670 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.99■□□□□ 0.95
RFX1P22670 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.99■□□□□ 0.95
RFX1P22670 RARRES2P10-201ENST00000564312 460 ntBASIC20.99■□□□□ 0.95
RFX1P22670 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.99■□□□□ 0.95
RFX1P22670 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.99■□□□□ 0.95
RFX1P22670 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
RFX1P22670 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.99■□□□□ 0.95
RFX1P22670 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.99■□□□□ 0.95
RFX1P22670 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RFX1P22670 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.99■□□□□ 0.95
RFX1P22670 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.98■□□□□ 0.95
RFX1P22670 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.98■□□□□ 0.95
RFX1P22670 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.98■□□□□ 0.95
RFX1P22670 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 KRT18P35-201ENST00000510488 1269 ntBASIC20.98■□□□□ 0.95
RFX1P22670 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.98■□□□□ 0.95
RFX1P22670 AL049597.2-201ENST00000565575 961 ntBASIC20.98■□□□□ 0.95
RFX1P22670 RN7SL850P-201ENST00000579959 291 ntBASIC20.98■□□□□ 0.95
RFX1P22670 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.98■□□□□ 0.95
RFX1P22670 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RFX1P22670 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.98■□□□□ 0.95
RFX1P22670 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.98■□□□□ 0.95
RFX1P22670 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 ZNF815P-204ENST00000434898 1737 ntBASIC20.98■□□□□ 0.95
RFX1P22670 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RFX1P22670 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX1P22670 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
RFX1P22670 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX1P22670 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RFX1P22670 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms