Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CACNA1AO00555 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CACNA1AO00555 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CACNA1AO00555 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CACNA1AO00555 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1AO00555 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1AO00555 AL049840.3-201ENST00000602669 611 ntBASIC18.25■□□□□ 0.51
CACNA1AO00555 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CACNA1AO00555 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1AO00555 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.25■□□□□ 0.51
CACNA1AO00555 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.25■□□□□ 0.51
CACNA1AO00555 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1AO00555 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CACNA1AO00555 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1AO00555 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1AO00555 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.24■□□□□ 0.51
CACNA1AO00555 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.24■□□□□ 0.51
CACNA1AO00555 AC090616.6-201ENST00000582640 721 ntBASIC18.24■□□□□ 0.51
CACNA1AO00555 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1AO00555 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 GK-202ENST00000378941 458 ntTSL 3 BASIC18.24■□□□□ 0.51
CACNA1AO00555 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1AO00555 PAWRP1-201ENST00000451083 565 ntBASIC18.24■□□□□ 0.51
CACNA1AO00555 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1AO00555 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1AO00555 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1AO00555 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1AO00555 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1AO00555 KRT8P17-201ENST00000453110 1448 ntBASIC18.23■□□□□ 0.51
CACNA1AO00555 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.23■□□□□ 0.51
CACNA1AO00555 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.23■□□□□ 0.51
CACNA1AO00555 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.23■□□□□ 0.51
CACNA1AO00555 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1AO00555 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.23■□□□□ 0.51
CACNA1AO00555 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1AO00555 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1AO00555 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1AO00555 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1AO00555 Z83836.1-201ENST00000624605 1642 ntBASIC18.23■□□□□ 0.51
CACNA1AO00555 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1AO00555 WDR53-203ENST00000429115 683 ntTSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CACNA1AO00555 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1AO00555 AC112482.1-201ENST00000492080 688 ntBASIC18.23■□□□□ 0.51
CACNA1AO00555 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1AO00555 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1AO00555 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CACNA1AO00555 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1AO00555 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1AO00555 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1AO00555 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.22■□□□□ 0.51
CACNA1AO00555 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.22■□□□□ 0.51
CACNA1AO00555 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.22■□□□□ 0.51
CACNA1AO00555 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1AO00555 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.22■□□□□ 0.51
CACNA1AO00555 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
CACNA1AO00555 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1AO00555 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.22■□□□□ 0.51
CACNA1AO00555 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1AO00555 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.22■□□□□ 0.51
CACNA1AO00555 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.22■□□□□ 0.51
CACNA1AO00555 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
CACNA1AO00555 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1AO00555 AC104109.2-201ENST00000602919 1418 ntBASIC18.22■□□□□ 0.51
CACNA1AO00555 NSUN5P1-202ENST00000421140 1535 ntBASIC18.22■□□□□ 0.51
CACNA1AO00555 NSUN5P2-203ENST00000457352 1529 ntBASIC18.22■□□□□ 0.51
CACNA1AO00555 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1AO00555 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1AO00555 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1AO00555 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.22■□□□□ 0.51
CACNA1AO00555 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1AO00555 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CACNA1AO00555 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.22■□□□□ 0.51
CACNA1AO00555 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CACNA1AO00555 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CACNA1AO00555 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.21■□□□□ 0.51
CACNA1AO00555 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms