Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 AC098934.4-201ENST00000564127 592 ntBASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 AL049812.1-201ENST00000432563 2267 ntBASIC17.81■□□□□ 0.44
CPSF4LA6NMK7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 AL121906.2-201ENST00000621597 723 ntBASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 HLA-B-256ENST00000639848 1089 ntBASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 MYC-209ENST00000641252 345 ntBASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 AP006587.1-201ENST00000534129 1502 ntBASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CPSF4LA6NMK7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 AC141586.3-201ENST00000562166 1838 ntBASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 PNMA6B-201ENST00000538162 1200 ntBASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 AL138781.1-201ENST00000566567 1274 ntBASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.79■□□□□ 0.44
CPSF4LA6NMK7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 AC060766.5-201ENST00000590539 871 ntBASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CPSF4LA6NMK7 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms