Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 KRT8P11-201ENST00000409686 1436 ntBASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 SLC25A1P2-201ENST00000430693 912 ntBASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 SDHAP1-207ENST00000440850 2000 ntBASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 AC128688.1-201ENST00000487626 519 ntBASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 AC092865.7-201ENST00000641832 219 ntBASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SMIM28A0A1B0GU29 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 AC073508.3-201ENST00000619697 1419 ntBASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 TMPOP1-202ENST00000424642 1267 ntBASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 FAM87A-204ENST00000613235 858 ntBASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMIM28A0A1B0GU29 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 MIR1224-201ENST00000408193 85 ntBASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 AL137013.1-201ENST00000432946 1228 ntBASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 AL023803.3-201ENST00000615559 522 ntBASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 AC116562.4-202ENST00000641738 218 ntBASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SMIM28A0A1B0GU29 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 CCR12P-201ENST00000446203 998 ntBASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 AC010203.1-204ENST00000548782 407 ntBASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SMIM28A0A1B0GU29 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.7■□□□□ 0.91
SMIM28A0A1B0GU29 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.7■□□□□ 0.91
SMIM28A0A1B0GU29 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 AC007663.1-201ENST00000438948 1240 ntBASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 KRT18P57-201ENST00000443599 1254 ntBASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 PRSS44-201ENST00000515154 1146 ntBASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
SMIM28A0A1B0GU29 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms