Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC117529.2-201ENST00000512159 2068 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VMP1Q96GC9 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 RAD17P1-201ENST00000418130 2042 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VMP1Q96GC9 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC021146.4-201ENST00000309229 279 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 RNA5SP22-201ENST00000365393 109 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 OR1L1-202ENST00000373686 1083 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 SNORA56-201ENST00000383966 129 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 RNU6-921P-201ENST00000384361 107 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 MIR513A2-201ENST00000385249 127 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 RNU6-837P-201ENST00000391056 108 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 PTMAP5-201ENST00000393073 333 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 TAF13P2-201ENST00000416876 286 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 RPL23AP1-201ENST00000428990 471 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 IFNNP1-201ENST00000429219 553 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 HLA-N-201ENST00000437516 135 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 PPIAP17-201ENST00000438507 471 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 H2AFZP6-201ENST00000444403 394 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC044797.1-201ENST00000445744 679 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 Z95152.1-201ENST00000453556 656 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 snoU13.1-201ENST00000459157 104 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 RPL5P24-201ENST00000463742 885 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 RN7SL459P-201ENST00000481078 302 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AP003385.6-201ENST00000531603 374 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AL023583.1-201ENST00000607518 1143 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 VN1R74P-201ENST00000613259 503 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 AP005019.3-201ENST00000620418 560 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.26□□□□□ -1.73
VMP1Q96GC9 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VMP1Q96GC9 AC097504.1-201ENST00000515103 2415 ntBASIC4.26□□□□□ -1.73
VMP1Q96GC9 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VMP1Q96GC9 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VMP1Q96GC9 AL355852.1-201ENST00000454081 1771 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VMP1Q96GC9 RNU6-600P-201ENST00000362524 99 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 RNU1-130P-201ENST00000363930 160 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 RNVU1-3-201ENST00000364313 161 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VMP1Q96GC9 RNU6-468P-201ENST00000384003 109 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 Y_RNA.493-201ENST00000384422 102 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 RPL22P22-201ENST00000395439 379 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AL121978.1-201ENST00000402778 359 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 HMGB3P19-201ENST00000403971 560 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AL807761.1-201ENST00000417622 171 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AL159169.1-201ENST00000421119 127 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC009480.2-201ENST00000422916 432 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VMP1Q96GC9 BMS1P19-201ENST00000433925 393 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 MTND2P28-201ENST00000457540 1044 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC090013.1-201ENST00000485147 480 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 NIPA2P2-201ENST00000496376 1083 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC139783.2-201ENST00000504847 1145 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC109471.1-201ENST00000511631 612 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 IGKV2-23-201ENST00000518729 323 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 IFITM8P-201ENST00000522529 394 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 OR4R2P-201ENST00000530815 597 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 LSM6P2-201ENST00000552208 177 ntBASIC4.25□□□□□ -1.73
VMP1Q96GC9 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.25□□□□□ -1.73
VMP1Q96GC9 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms