Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
COL6A1P12109 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
COL6A1P12109 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
COL6A1P12109 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
COL6A1P12109 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.65□□□□□ -1.51
COL6A1P12109 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A1P12109 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC138907.8-201ENST00000623981 2256 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 CASC19-260ENST00000641828 2001 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A1P12109 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A1P12109 HMGB1P5-201ENST00000255320 642 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 RNA5SP388-201ENST00000362584 119 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 SNORA4.1-201ENST00000364263 144 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 MIR23A-201ENST00000385245 73 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL6A1P12109 RN7SKP247-201ENST00000411094 308 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 RN7SKP17-201ENST00000411242 351 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 RNU6-575P-201ENST00000411326 105 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 ELOCP19-201ENST00000411919 318 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.64□□□□□ -1.51
COL6A1P12109 MTND1P2-201ENST00000430604 821 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 UBE2V1P8-201ENST00000437166 265 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC093155.1-201ENST00000440164 826 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 TCEA1P3-201ENST00000443005 880 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AL354714.3-201ENST00000447284 493 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 OR1H1P-201ENST00000448731 937 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 IGHV5-78-201ENST00000450948 295 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 RPL23AP35-201ENST00000451906 501 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 PNPLA4P1-201ENST00000458328 305 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC090602.1-201ENST00000469695 252 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 RPL12P20-201ENST00000475538 479 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 VPS26AP1-201ENST00000483197 979 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC025881.1-201ENST00000518851 512 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC5.64□□□□□ -1.51
COL6A1P12109 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A1P12109 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC5.64□□□□□ -1.51
COL6A1P12109 MIR4512-201ENST00000583257 77 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC112220.3-201ENST00000605502 502 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC091946.2-201ENST00000606105 291 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC106028.5-201ENST00000610332 395 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 AC005962.2-201ENST00000611427 652 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A1P12109 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
COL6A1P12109 BMS1P21-201ENST00000634565 365 ntBASIC5.64□□□□□ -1.51
COL6A1P12109 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A1P12109 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.64□□□□□ -1.51
COL6A1P12109 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL6A1P12109 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
COL6A1P12109 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
COL6A1P12109 CASC19-204ENST00000641001 2055 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 AC139713.2-214ENST00000642059 1811 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL6A1P12109 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 OR4K15-201ENST00000305051 1216 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 RNA5SP515-201ENST00000364570 118 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 RNU6-621P-201ENST00000364752 109 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 SNORA70F-201ENST00000384142 135 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 MTCO3P31-201ENST00000405526 789 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 BTF3P7-201ENST00000407097 488 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AC092745.2-202ENST00000411880 369 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 RPL21P108-201ENST00000413857 481 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 RPS7P13-201ENST00000413955 498 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 TCEA1P4-201ENST00000415066 844 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AC016831.2-201ENST00000417179 352 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 BX510359.2-201ENST00000417920 305 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AF186996.5-201ENST00000418098 904 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AL592293.2-201ENST00000422292 996 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 RPL23AP1-201ENST00000428990 471 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL6A1P12109 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.63□□□□□ -1.51
COL6A1P12109 WASF1P1-201ENST00000447560 1131 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.63□□□□□ -1.51
COL6A1P12109 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 RN7SKP276-201ENST00000516242 268 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AC118273.2-201ENST00000532092 465 ntBASIC5.63□□□□□ -1.51
COL6A1P12109 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.63□□□□□ -1.51
COL6A1P12109 AP001880.2-201ENST00000538233 448 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms