Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 AL031119.1-201ENST00000404707 1879 ntBASIC5.39□□□□□ -1.55
TRIM39Q9HCM9 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC002525.1-201ENST00000624392 1622 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 MTND5P26-201ENST00000426018 1752 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 RNA5SP335-201ENST00000363817 110 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 RNU6-1226P-201ENST00000384317 107 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 MTCO1P17-201ENST00000411522 491 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 MTCO2P5-201ENST00000422621 426 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 HSPE1P28-201ENST00000443139 211 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC087312.1-201ENST00000471411 480 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 OR2AO1P-201ENST00000476497 403 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 RN7SL447P-201ENST00000494711 245 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 RNF138P1-201ENST00000502765 546 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 NDUFB4P2-201ENST00000509515 391 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC034159.1-201ENST00000513885 583 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 OR5M7P-201ENST00000526140 972 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC124068.1-201ENST00000563131 678 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC090312.1-201ENST00000580637 348 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC103792.1-201ENST00000603591 919 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC090578.1-201ENST00000604955 591 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AL109618.2-201ENST00000605527 211 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AL139124.1-201ENST00000609123 421 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 uc_338.7-201ENST00000621834 124 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 OR5AK4P-201ENST00000635912 903 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 CASC19-264ENST00000641912 1184 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ELL2P4-201ENST00000446870 1376 ntBASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
TRIM39Q9HCM9 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RNU6-1243P-201ENST00000364028 107 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RNU6-769P-201ENST00000384407 104 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RNU1-77P-201ENST00000390868 162 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RNU6-248P-201ENST00000410720 107 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 CYCSP6-201ENST00000434498 302 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 GSTM5P1-201ENST00000434751 660 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC073465.2-201ENST00000440938 498 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC004980.3-201ENST00000447046 365 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 USP9YP34-201ENST00000453983 808 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC099563.1-201ENST00000456086 418 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC011225.1-201ENST00000457751 369 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC090142.1-201ENST00000465776 462 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RPL31P50-201ENST00000471002 296 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RPL7P39-201ENST00000481157 744 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC105252.1-201ENST00000503089 286 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RN7SKP244-201ENST00000516513 307 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 RNU6-506P-201ENST00000516553 94 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms