Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNU6-628P-201ENST00000410675 107 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 RN7SKP53-201ENST00000411337 315 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 RANP4-201ENST00000413361 655 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 RPL31P12-201ENST00000422587 358 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 AP000907.1-201ENST00000428428 510 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 CACYBPP1-201ENST00000438592 684 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 RPL6P9-201ENST00000466502 859 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 VN1R105P-201ENST00000486595 910 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 AC093267.1-201ENST00000489176 961 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 AP001086.1-201ENST00000494882 321 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 FABP5P12-201ENST00000515543 389 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 RANP9-201ENST00000519957 271 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 AC004943.3-201ENST00000624116 600 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC42Q96M95 RNA5SP196-201ENST00000625967 102 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 MIR7153-201ENST00000637758 57 ntBASIC3.78□□□□□ -1.8
CCDC42Q96M95 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC42Q96M95 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.78□□□□□ -1.81
CCDC42Q96M95 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.78□□□□□ -1.81
CCDC42Q96M95 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL513302.2-201ENST00000562313 1842 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC42Q96M95 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC42Q96M95 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC017002.4-201ENST00000604721 1525 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 OR4A15-201ENST00000314706 1035 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 RNU1-75P-201ENST00000347264 129 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 EI24P2-201ENST00000397776 1076 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL049693.1-201ENST00000402760 611 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL034374.1-201ENST00000406329 351 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 RN7SKP156-201ENST00000410308 342 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 AIMP1P1-201ENST00000418670 937 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL513174.1-201ENST00000423182 629 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 CALM1P2-201ENST00000452941 448 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC007967.1-201ENST00000455422 1159 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 RPS4XP2-201ENST00000458402 793 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 RPL23AP67-201ENST00000465341 474 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC078785.3-201ENST00000476607 425 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 MIR2116-201ENST00000517221 80 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 MIR4443-201ENST00000585052 53 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC007423.1-201ENST00000605009 627 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AL096803.3-201ENST00000609032 532 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 U6.98-201ENST00000637157 84 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC42Q96M95 ZNF826P-207ENST00000622273 1910 ntBASIC3.77□□□□□ -1.81
CCDC42Q96M95 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.77□□□□□ -1.81
CCDC42Q96M95 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC42Q96M95 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 NDUFA5P9-201ENST00000472609 340 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 GAPDHP36-201ENST00000480688 918 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC011037.1-201ENST00000483964 558 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 HMGB1P21-201ENST00000502313 581 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC026402.1-201ENST00000513642 170 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 MIR2276-201ENST00000516886 89 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC107934.2-201ENST00000518653 310 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 MED28P5-201ENST00000528254 438 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 MTND5P21-201ENST00000531961 522 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 MIR4286-201ENST00000580651 93 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 AL590392.1-201ENST00000604960 446 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC007620.3-201ENST00000608131 497 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC112200.1-201ENST00000625015 234 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC42Q96M95 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.76□□□□□ -1.81
CCDC42Q96M95 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC42Q96M95 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC42Q96M95 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms