Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.43□□□□□ -1.86
COL6A3P12111 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.43□□□□□ -1.86
COL6A3P12111 TRAV15-201ENST00000556680 249 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.43□□□□□ -1.86
COL6A3P12111 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.43□□□□□ -1.86
COL6A3P12111 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
COL6A3P12111 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
COL6A3P12111 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 AL353692.2-201ENST00000407054 335 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.43□□□□□ -1.86
COL6A3P12111 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 AP001004.1-201ENST00000582468 324 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.43□□□□□ -1.86
COL6A3P12111 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
COL6A3P12111 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 ELF2P3-201ENST00000445099 1506 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
COL6A3P12111 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL6A3P12111 SNORA18.3-201ENST00000384122 132 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 AC063976.3-201ENST00000426849 329 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.43□□□□□ -1.86
COL6A3P12111 RPS29P31-201ENST00000446147 164 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 SNORD53-201ENST00000579969 78 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 AL162574.2-201ENST00000614618 657 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 AC104581.5-201ENST00000624171 7141 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
COL6A3P12111 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
COL6A3P12111 MIR1271-201ENST00000408537 86 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.42□□□□□ -1.86
COL6A3P12111 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC3.42□□□□□ -1.86
COL6A3P12111 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.42□□□□□ -1.86
COL6A3P12111 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.42□□□□□ -1.86
COL6A3P12111 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.42□□□□□ -1.86
COL6A3P12111 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC3.42□□□□□ -1.86
COL6A3P12111 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
COL6A3P12111 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.42□□□□□ -1.86
COL6A3P12111 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.42□□□□□ -1.86
COL6A3P12111 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.42□□□□□ -1.86
COL6A3P12111 RPL36AP10-201ENST00000421785 322 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 BX119904.1-201ENST00000432026 348 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.42□□□□□ -1.86
COL6A3P12111 AC104687.1-201ENST00000485829 412 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 AC068724.1-201ENST00000487100 792 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.42□□□□□ -1.86
COL6A3P12111 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
COL6A3P12111 GVINP1-202ENST00000531871 7271 ntBASIC3.42□□□□□ -1.86
COL6A3P12111 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
COL6A3P12111 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL6A3P12111 AC134882.1-201ENST00000603738 1676 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 U8.2-201ENST00000363156 134 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 OR51A3P-201ENST00000413596 924 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AC022018.1-201ENST00000430685 241 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AC007563.3-201ENST00000433233 371 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.41□□□□□ -1.86
COL6A3P12111 SUMO2P20-201ENST00000520803 283 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AC138761.3-201ENST00000579993 334 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AP004607.9-201ENST00000618202 316 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.41□□□□□ -1.86
COL6A3P12111 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 RNA5SP99-201ENST00000364020 114 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AC146507.2-201ENST00000460608 476 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.41□□□□□ -1.86
COL6A3P12111 AC138938.1-201ENST00000515431 782 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.41□□□□□ -1.86
COL6A3P12111 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
COL6A3P12111 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC3.41□□□□□ -1.86
COL6A3P12111 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.41□□□□□ -1.86
COL6A3P12111 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
COL6A3P12111 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.41□□□□□ -1.86
COL6A3P12111 Y_RNA.540-201ENST00000384638 111 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.41□□□□□ -1.86
COL6A3P12111 OR6R2P-201ENST00000609216 300 ntBASIC3.41□□□□□ -1.86
COL6A3P12111 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.41□□□□□ -1.86
COL6A3P12111 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
COL6A3P12111 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.86
COL6A3P12111 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
COL6A3P12111 UBE2D3P1-201ENST00000436669 444 ntBASIC3.4□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms