Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SPRR2C-201ENST00000290702 219 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD4P09016 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD4P09016 RNU6-185P-201ENST00000384421 107 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 MIR92A2-201ENST00000385299 75 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 RNU6-244P-201ENST00000391028 104 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 PPIAP31-201ENST00000405422 495 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 JKAMPP1-201ENST00000413804 919 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 SNRPFP1-201ENST00000414761 252 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.9□□□□□ -1.79
HOXD4P09016 RPS20P1-201ENST00000434853 354 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 RPS7P2-201ENST00000435134 607 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 MED6P1-201ENST00000439659 713 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD4P09016 RPL6P5-201ENST00000445678 828 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 OFD1P3Y-201ENST00000453312 783 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 DDX39BP2-208ENST00000453923 258 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 RPL23AP12-201ENST00000467573 473 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD4P09016 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 RN7SL604P-201ENST00000492589 296 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC025459.1-201ENST00000504072 156 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXD4P09016 AC108475.1-201ENST00000507880 950 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD4P09016 ATP1B1P1-201ENST00000509767 915 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC008958.1-201ENST00000511047 682 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 KCTD9P2-201ENST00000512203 1013 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 RNA5SP73-201ENST00000516744 108 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXD4P09016 MTND2P32-201ENST00000521584 1038 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 AC118942.1-201ENST00000529674 1035 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD4P09016 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.9□□□□□ -1.79
HOXD4P09016 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD4P09016 AL021997.2-201ENST00000615674 271 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC3.9□□□□□ -1.79
HOXD4P09016 AC067852.7-201ENST00000623270 535 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC006927.4-201ENST00000639187 543 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 AC006927.2-201ENST00000639256 389 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
HOXD4P09016 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD4P09016 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.9□□□□□ -1.79
HOXD4P09016 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD4P09016 HSPA8P1-201ENST00000425843 1833 ntBASIC3.9□□□□□ -1.79
HOXD4P09016 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.79
HOXD4P09016 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD4P09016 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HOXD4P09016 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD4P09016 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
HOXD4P09016 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXD4P09016 AL158163.1-201ENST00000603915 1649 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 RNA5SP307-201ENST00000362863 116 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 RNU5E-10P-201ENST00000363506 118 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 RNU5B-4P-201ENST00000363508 111 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 SNORD56.4-201ENST00000363883 71 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC234772.1-201ENST00000377927 937 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 RNU6-146P-201ENST00000384602 108 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 SNORA74C-2-201ENST00000411179 201 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC008173.1-201ENST00000418901 264 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AL389915.1-201ENST00000422463 466 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 RWDD4P2-201ENST00000426392 563 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 FABP5P3-201ENST00000437960 408 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD4P09016 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD4P09016 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD4P09016 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 RPL23AP81-201ENST00000455252 467 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXD4P09016 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC096571.1-202ENST00000506634 735 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXD4P09016 SNORA31.13-201ENST00000516624 135 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC010376.1-201ENST00000522101 334 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 MTCO1P49-201ENST00000523429 802 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 OR7E13P-201ENST00000526052 910 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXD4P09016 AC135001.1-201ENST00000544546 283 ntBASIC3.89□□□□□ -1.79
HOXD4P09016 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms