Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FANCD2P2-201ENST00000437591 1400 ntBASIC6.14□□□□□ -1.43
MSX1P28360 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.14□□□□□ -1.43
MSX1P28360 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
MSX1P28360 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.14□□□□□ -1.43
MSX1P28360 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
MSX1P28360 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
MSX1P28360 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 RNU6-1062P-201ENST00000383908 107 ntBASIC6.13□□□□□ -1.43
MSX1P28360 MIR649-201ENST00000384843 97 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AL023807.1-201ENST00000407932 359 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AL591848.1-201ENST00000413092 322 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX1P28360 ATG3P1-201ENST00000419507 911 ntBASIC6.13□□□□□ -1.43
MSX1P28360 NME1P1-201ENST00000420914 382 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC128677.1-201ENST00000436016 442 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX1P28360 SUMO2P3-201ENST00000438311 288 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX1P28360 PFN1P11-201ENST00000445829 389 ntBASIC6.13□□□□□ -1.43
MSX1P28360 TIMM8BP2-201ENST00000445940 251 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC020550.1-201ENST00000447385 163 ntBASIC6.13□□□□□ -1.43
MSX1P28360 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX1P28360 AC026254.2-201ENST00000475295 371 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC058823.1-201ENST00000485315 474 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AL390198.2-201ENST00000510553 222 ntBASIC6.13□□□□□ -1.43
MSX1P28360 FTH1P9-201ENST00000513251 355 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC022360.1-201ENST00000521058 340 ntBASIC6.13□□□□□ -1.43
MSX1P28360 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
MSX1P28360 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 HMGB1P42-201ENST00000532126 553 ntBASIC6.13□□□□□ -1.43
MSX1P28360 CYCSP28-201ENST00000534284 321 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX1P28360 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.13□□□□□ -1.43
MSX1P28360 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC6.13□□□□□ -1.43
MSX1P28360 MIR4732-201ENST00000581873 76 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC011477.5-201ENST00000586571 259 ntBASIC6.13□□□□□ -1.43
MSX1P28360 UBE2L4-201ENST00000587688 464 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC023043.2-201ENST00000589678 1026 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.13□□□□□ -1.43
MSX1P28360 AC012603.1-201ENST00000606424 528 ntBASIC6.13□□□□□ -1.43
MSX1P28360 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX1P28360 AL591926.1-201ENST00000620542 217 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AC078938.1-201ENST00000620993 318 ntBASIC6.13□□□□□ -1.43
MSX1P28360 MIR6806-201ENST00000622141 64 ntBASIC6.13□□□□□ -1.43
MSX1P28360 AL159972.1-201ENST00000625150 448 ntBASIC6.13□□□□□ -1.43
MSX1P28360 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX1P28360 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 CLCA3P-203ENST00000490028 2781 ntBASIC6.13□□□□□ -1.43
MSX1P28360 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 DHX40P1-201ENST00000588725 1412 ntBASIC6.13□□□□□ -1.43
MSX1P28360 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 MTND5P28-201ENST00000438005 1594 ntBASIC6.13□□□□□ -1.43
MSX1P28360 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.13□□□□□ -1.43
MSX1P28360 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
MSX1P28360 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
MSX1P28360 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.12□□□□□ -1.43
MSX1P28360 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 RNU6-890P-201ENST00000384121 107 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AL360182.1-201ENST00000397433 468 ntBASIC6.12□□□□□ -1.43
MSX1P28360 UBE2V1P2-201ENST00000397758 440 ntBASIC6.12□□□□□ -1.43
MSX1P28360 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
MSX1P28360 RN7SKP106-201ENST00000410832 272 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AC080125.1-201ENST00000414888 684 ntBASIC6.12□□□□□ -1.43
MSX1P28360 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX1P28360 AC068533.1-201ENST00000418542 415 ntBASIC6.12□□□□□ -1.43
MSX1P28360 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
MSX1P28360 NMD3P2-201ENST00000421815 761 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX1P28360 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.12□□□□□ -1.43
MSX1P28360 AL121578.2-201ENST00000448797 447 ntBASIC6.12□□□□□ -1.43
MSX1P28360 RBMY2TP-201ENST00000451162 947 ntBASIC6.12□□□□□ -1.43
MSX1P28360 RPS20P21-201ENST00000466859 343 ntBASIC6.12□□□□□ -1.43
MSX1P28360 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.12□□□□□ -1.43
MSX1P28360 PPP1R11P1-201ENST00000486095 376 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms